Strain Fitness in Pseudomonas putida KT2440 around PP_0883

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,022,781	+		PP_0882	0.43	+3.7
1,022,781	+		PP_0882	0.43	+0.2
1,022,782	-		PP_0882	0.43	+1.7
1,022,782	-		PP_0882	0.43	-1.3
1,022,795	-		PP_0882	0.44	-0.0
1,023,037	-		PP_0882	0.59	+0.9
1,023,037	-		PP_0882	0.59	+1.4
1,023,264	+		PP_0882	0.73	+1.1
1,023,265	-		PP_0882	0.73	-0.2
1,023,265	-		PP_0882	0.73	-0.2
1,023,265	-		PP_0882	0.73	-0.7
1,023,372	+		PP_0882	0.79	+2.7
1,023,373	-		PP_0882	0.79	-0.5
1,023,418	-		PP_0882	0.82	+1.1
1,023,418	-		PP_0882	0.82	-1.8
1,023,418	-		PP_0882	0.82	+0.6
1,023,549	+				-1.8
1,023,549	+				-0.7
1,023,550	-				-0.6
1,023,550	-				-1.4
1,023,587	-				+1.5
1,023,725	-				-2.2
1,023,725	-				-1.2
1,023,855	+				-0.1
1,023,856	-				+1.1
1,023,856	-				+2.4
1,023,903	+				+1.4
1,023,904	-				+0.3
1,023,927	+		PP_0883	0.12	+0.9
1,023,927	+		PP_0883	0.12	+0.0
1,023,927	+		PP_0883	0.12	+2.7
1,023,928	-		PP_0883	0.12	-0.2
1,023,928	-		PP_0883	0.12	-1.6
1,023,928	-		PP_0883	0.12	+1.1
1,023,928	-		PP_0883	0.12	-1.0
1,024,011	+		PP_0883	0.18	+3.5
1,024,012	-		PP_0883	0.18	+0.7
1,024,012	-		PP_0883	0.18	-0.2
1,024,062	+		PP_0883	0.21	+0.3
1,024,062	+		PP_0883	0.21	+3.2
1,024,062	+		PP_0883	0.21	-0.6
1,024,063	-		PP_0883	0.21	+1.4
1,024,063	-		PP_0883	0.21	+0.6
1,024,158	+		PP_0883	0.28	-0.5
1,024,233	+		PP_0883	0.34	+0.2
1,024,287	+		PP_0883	0.38	-1.2
1,024,287	+				+1.4
1,024,287	+		PP_0883	0.38	-2.6
1,024,290	+		PP_0883	0.38	+0.4
1,024,290	+		PP_0883	0.38	+3.2
1,024,290	+		PP_0883	0.38	+2.4
1,024,290	+		PP_0883	0.38	-0.9
1,024,353	+		PP_0883	0.42	+0.2
1,024,354	-		PP_0883	0.43	-0.1
1,024,354	-		PP_0883	0.43	-1.5
1,024,354	-		PP_0883	0.43	+0.1
1,024,354	-		PP_0883	0.43	+0.7
1,024,356	+		PP_0883	0.43	+2.2
1,024,357	-		PP_0883	0.43	-1.9
1,024,357	-		PP_0883	0.43	+1.4
1,024,389	+		PP_0883	0.45	-0.6
1,024,400	-		PP_0883	0.46	+3.7
1,024,400	-		PP_0883	0.46	-0.2
1,024,400	-		PP_0883	0.46	-0.1
1,024,422	+		PP_0883	0.47	+1.0
1,024,423	-		PP_0883	0.48	-0.5
1,024,508	-		PP_0883	0.54	+0.3
1,024,618	-		PP_0883	0.62	-0.6
1,024,618	-		PP_0883	0.62	-1.2
1,024,657	+		PP_0883	0.64	-0.2
1,024,687	+		PP_0883	0.67	+0.5
1,024,688	-		PP_0883	0.67	+0.3
1,024,857	+		PP_0883	0.79	-3.5
1,024,858	-		PP_0883	0.79	+1.7
1,024,926	+		PP_0883	0.84	+0.7
1,024,927	-		PP_0883	0.84	+0.1
1,024,929	+		PP_0883	0.84	-0.0
1,024,969	-		PP_0883	0.87	+3.0
1,024,969	-		PP_0883	0.87	+0.4
1,025,138	+				-0.6
1,025,138	+				+1.8
1,025,138	+				-1.3
1,025,151	-				+2.7
1,025,173	+				+0.4
1,025,174	-				+2.0
1,025,174	-				+0.3
1,025,376	+				+1.8
1,025,377	-				+1.4
1,025,377	-				+3.8
1,025,447	-				+1.7
1,025,489	+				-0.2
1,025,607	+		PP_0884	0.15	+4.1
1,025,607	+		PP_0884	0.15	+1.4
1,025,608	-		PP_0884	0.15	+1.2
1,025,730	+		PP_0884	0.22	-0.1
1,025,730	+		PP_0884	0.22	-0.1
1,025,745	+		PP_0884	0.23	+1.4
1,025,745	+		PP_0884	0.23	+0.4
1,025,745	+		PP_0884	0.23	-0.6
1,025,746	-		PP_0884	0.23	+0.5
1,025,746	-		PP_0884	0.23	+2.2
1,025,826	+		PP_0884	0.28	-0.7
1,025,827	-		PP_0884	0.28	+0.5
1,025,827	-		PP_0884	0.28	-1.7
1,025,946	+		PP_0884	0.36	+1.1
1,026,090	+		PP_0884	0.45	-1.1
1,026,090	+		PP_0884	0.45	-1.4
1,026,090	+		PP_0884	0.45	+0.4
1,026,099	+		PP_0884	0.45	+1.0
1,026,099	+		PP_0884	0.45	-0.2
1,026,099	+		PP_0884	0.45	+0.0
1,026,099	+		PP_0884	0.45	-0.3
1,026,100	-		PP_0884	0.46	+1.4
1,026,100	-		PP_0884	0.46	+0.3