Strain Fitness in Pseudomonas putida KT2440 around PP_0881

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,020,141	+		PP_0880	0.11	-1.1
1,020,141	+		PP_0880	0.11	-1.2
1,020,141	+		PP_0880	0.11	-1.6
1,020,142	-		PP_0880	0.11	-0.8
1,020,166	+		PP_0880	0.14	+1.3
1,020,421	+		PP_0880	0.41	+1.5
1,020,421	+		PP_0880	0.41	+0.4
1,020,905	-				-0.6
1,020,905	-				-2.8
1,020,960	-				+0.4
1,020,960	-				-3.5
1,021,013	+				-2.6
1,021,289	+		PP_0881	0.31	-2.1
1,021,290	-		PP_0881	0.31	+1.4
1,021,304	-		PP_0881	0.32	+0.4
1,021,437	+		PP_0881	0.46	-1.6
1,021,469	+				+0.4
1,021,579	+		PP_0881	0.60	-0.0
1,021,579	+		PP_0881	0.60	-0.7
1,021,580	-		PP_0881	0.60	-2.5
1,021,580	-		PP_0881	0.60	-2.9
1,021,580	-		PP_0881	0.60	-1.9
1,021,631	-		PP_0881	0.65	+1.4
1,021,631	-		PP_0881	0.65	-4.7
1,021,781	+		PP_0881	0.80	+0.4
1,021,781	+		PP_0881	0.80	-1.6
1,021,782	-		PP_0881	0.80	-1.5
1,021,782	-		PP_0881	0.80	-2.0
1,021,907	-				+3.0
1,021,948	+				-1.2
1,021,948	+				+0.4
1,021,997	-				+0.6
1,022,079	+				+1.0
1,022,079	+				+1.0
1,022,080	-				+0.1
1,022,080	-				-1.2
1,022,130	+				+1.7
1,022,130	+				-2.9
1,022,131	-				-0.6
1,022,226	+				+1.7
1,022,226	+				-1.9
1,022,310	+		PP_0882	0.14	+1.4
1,022,310	+		PP_0882	0.14	+0.2
1,022,310	+		PP_0882	0.14	+0.2
1,022,311	-		PP_0882	0.14	-0.0
1,022,567	+		PP_0882	0.30	+3.7
1,022,614	+		PP_0882	0.33	+2.0
1,022,758	+		PP_0882	0.42	-0.6
1,022,781	+		PP_0882	0.43	+3.7
1,022,781	+		PP_0882	0.43	+0.2
1,022,782	-		PP_0882	0.43	+1.7
1,022,782	-		PP_0882	0.43	-1.3
1,022,795	-		PP_0882	0.44	-0.0