Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0748 and PP_0749 are separated by 51 nucleotides PP_0749 and PP_0750 are separated by 44 nucleotides PP_0750 and PP_0751 are separated by 176 nucleotides
PP_0748: PP_0748 - conserved protein of unknown function, at 866,548 to 867,021
_0748
PP_0749: PP_0749 - conserved exported protein of unknown function, at 867,073 to 867,543
_0749
PP_0750: PP_0750 - conserved protein of unknown function, at 867,588 to 867,902
_0750
PP_0751: PP_0751 - malate:quinone oxidoreductase, at 868,079 to 869,587
_0751
Position (kb) 867
868 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 866.647 kb on - strand, within PP_0748 at 866.695 kb on + strand, within PP_0748 at 866.696 kb on - strand, within PP_0748 at 866.696 kb on - strand, within PP_0748 at 866.857 kb on - strand, within PP_0748 at 866.857 kb on - strand, within PP_0748 at 866.860 kb on + strand, within PP_0748 at 866.860 kb on + strand, within PP_0748 at 866.860 kb on + strand, within PP_0748 at 866.860 kb on + strand at 866.860 kb on + strand, within PP_0748 at 866.860 kb on + strand, within PP_0748 at 866.860 kb on + strand, within PP_0748 at 866.860 kb on + strand, within PP_0748 at 866.860 kb on + strand, within PP_0748 at 866.860 kb on + strand, within PP_0748 at 866.861 kb on - strand, within PP_0748 at 866.861 kb on - strand, within PP_0748 at 866.861 kb on - strand, within PP_0748 at 866.861 kb on - strand, within PP_0748 at 866.990 kb on - strand at 867.031 kb on + strand at 867.032 kb on - strand at 867.043 kb on + strand at 867.044 kb on - strand at 867.059 kb on - strand at 867.215 kb on - strand, within PP_0749 at 867.215 kb on - strand, within PP_0749 at 867.227 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.382 kb on + strand, within PP_0749 at 867.383 kb on - strand, within PP_0749 at 867.383 kb on - strand, within PP_0749 at 867.383 kb on - strand, within PP_0749 at 867.383 kb on - strand, within PP_0749 at 867.431 kb on - strand, within PP_0749 at 867.534 kb on + strand at 867.534 kb on + strand at 867.535 kb on - strand at 867.535 kb on - strand at 867.535 kb on - strand at 867.535 kb on - strand at 867.617 kb on + strand at 867.617 kb on + strand at 867.634 kb on + strand, within PP_0750 at 867.660 kb on + strand, within PP_0750 at 867.660 kb on + strand at 867.660 kb on + strand, within PP_0750 at 867.661 kb on - strand, within PP_0750 at 867.661 kb on - strand, within PP_0750 at 867.736 kb on - strand, within PP_0750 at 867.773 kb on - strand, within PP_0750 at 867.773 kb on - strand, within PP_0750 at 867.871 kb on - strand at 867.871 kb on - strand at 867.871 kb on - strand at 867.871 kb on - strand at 867.887 kb on + strand at 867.887 kb on + strand at 867.888 kb on - strand at 867.888 kb on - strand at 868.014 kb on + strand at 868.080 kb on + strand at 868.080 kb on + strand at 868.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 866,647 - PP_0748 0.21 -0.1 866,695 + PP_0748 0.31 +0.9 866,696 - PP_0748 0.31 +0.3 866,696 - PP_0748 0.31 -2.7 866,857 - PP_0748 0.65 +2.6 866,857 - PP_0748 0.65 -0.1 866,860 + PP_0748 0.66 +0.1 866,860 + PP_0748 0.66 -0.2 866,860 + PP_0748 0.66 -0.0 866,860 + +1.9 866,860 + PP_0748 0.66 +0.1 866,860 + PP_0748 0.66 -1.1 866,860 + PP_0748 0.66 +3.3 866,860 + PP_0748 0.66 +1.0 866,860 + PP_0748 0.66 -0.0 866,860 + PP_0748 0.66 -1.1 866,861 - PP_0748 0.66 -1.5 866,861 - PP_0748 0.66 -1.0 866,861 - PP_0748 0.66 -2.7 866,861 - PP_0748 0.66 +1.0 866,990 - -1.1 867,031 + -1.4 867,032 - +0.7 867,043 + +0.3 867,044 - +0.8 867,059 - -0.7 867,215 - PP_0749 0.30 -3.0 867,215 - PP_0749 0.30 +0.1 867,227 + PP_0749 0.33 +2.0 867,382 + PP_0749 0.66 +3.3 867,382 + PP_0749 0.66 -0.7 867,382 + PP_0749 0.66 -1.2 867,382 + PP_0749 0.66 +1.4 867,382 + PP_0749 0.66 +0.4 867,383 - PP_0749 0.66 +0.2 867,383 - PP_0749 0.66 -0.7 867,383 - PP_0749 0.66 +0.3 867,383 - PP_0749 0.66 +0.6 867,431 - PP_0749 0.76 -1.1 867,534 + +0.1 867,534 + +0.5 867,535 - +3.5 867,535 - +1.3 867,535 - -5.1 867,535 - -0.1 867,617 + +3.3 867,617 + -1.7 867,634 + PP_0750 0.15 +1.7 867,660 + PP_0750 0.23 +0.1 867,660 + +0.3 867,660 + PP_0750 0.23 -0.7 867,661 - PP_0750 0.23 -3.3 867,661 - PP_0750 0.23 +1.8 867,736 - PP_0750 0.47 +1.9 867,773 - PP_0750 0.59 +1.4 867,773 - PP_0750 0.59 +1.4 867,871 - +1.4 867,871 - -0.1 867,871 - +1.3 867,871 - +3.3 867,887 + +0.9 867,887 + +0.3 867,888 - +0.1 867,888 - +0.3 868,014 + +1.6 868,080 + -1.7 868,080 + -0.6 868,087 - -0.3
Or see this region's nucleotide sequence