Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5449 and PP_0639 are separated by 199 nucleotides PP_0639 and PP_0640 overlap by 4 nucleotides
PP_5449: PP_5449 - conserved exported protein of unknown function, at 747,948 to 748,766
_5449
PP_0639: PP_0639 - conserved protein of unknown function, at 748,966 to 749,682
_0639
PP_0640: PP_0640 - conserved protein of unknown function, at 749,679 to 750,863
_0640
Position (kb) 748
749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 747.977 kb on - strand at 748.034 kb on + strand, within PP_5449 at 748.034 kb on + strand, within PP_5449 at 748.035 kb on - strand, within PP_5449 at 748.035 kb on - strand, within PP_5449 at 748.039 kb on - strand, within PP_5449 at 748.039 kb on - strand, within PP_5449 at 748.110 kb on - strand, within PP_5449 at 748.127 kb on + strand, within PP_5449 at 748.253 kb on + strand, within PP_5449 at 748.312 kb on - strand, within PP_5449 at 748.328 kb on - strand, within PP_5449 at 748.494 kb on - strand, within PP_5449 at 748.566 kb on + strand, within PP_5449 at 748.738 kb on - strand at 748.773 kb on - strand at 748.812 kb on + strand at 748.812 kb on + strand at 748.879 kb on + strand at 748.880 kb on - strand at 749.101 kb on - strand, within PP_0639 at 749.141 kb on + strand, within PP_0639 at 749.239 kb on - strand, within PP_0639 at 749.279 kb on - strand, within PP_0639 at 749.308 kb on + strand, within PP_0639 at 749.309 kb on - strand, within PP_0639 at 749.309 kb on - strand, within PP_0639 at 749.315 kb on - strand, within PP_0639 at 749.355 kb on + strand, within PP_0639 at 749.421 kb on - strand, within PP_0639 at 749.652 kb on - strand at 749.652 kb on - strand at 749.704 kb on + strand at 750.454 kb on - strand, within PP_0640 at 750.492 kb on - strand, within PP_0640 at 750.593 kb on + strand, within PP_0640 at 750.616 kb on + strand, within PP_0640 at 750.617 kb on - strand, within PP_0640 at 750.658 kb on - strand, within PP_0640
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 747,977 - -0.2 748,034 + PP_5449 0.11 +0.3 748,034 + PP_5449 0.11 -0.4 748,035 - PP_5449 0.11 +0.3 748,035 - PP_5449 0.11 +0.4 748,039 - PP_5449 0.11 +0.5 748,039 - PP_5449 0.11 +0.1 748,110 - PP_5449 0.20 +0.3 748,127 + PP_5449 0.22 +3.5 748,253 + PP_5449 0.37 +0.7 748,312 - PP_5449 0.44 -2.6 748,328 - PP_5449 0.46 +0.3 748,494 - PP_5449 0.67 -0.5 748,566 + PP_5449 0.75 -1.6 748,738 - -1.5 748,773 - -0.8 748,812 + +0.3 748,812 + -0.1 748,879 + -1.7 748,880 - +1.9 749,101 - PP_0639 0.19 +0.5 749,141 + PP_0639 0.24 -0.4 749,239 - PP_0639 0.38 +2.4 749,279 - PP_0639 0.44 +0.1 749,308 + PP_0639 0.48 +0.6 749,309 - PP_0639 0.48 +1.2 749,309 - PP_0639 0.48 -0.3 749,315 - PP_0639 0.49 -2.0 749,355 + PP_0639 0.54 +2.2 749,421 - PP_0639 0.63 +0.2 749,652 - -1.3 749,652 - +1.5 749,704 + -3.6 750,454 - PP_0640 0.65 +1.6 750,492 - PP_0640 0.69 +2.6 750,593 + PP_0640 0.77 +0.7 750,616 + PP_0640 0.79 -3.2 750,617 - PP_0640 0.79 -0.0 750,658 - PP_0640 0.83 -0.1
Or see this region's nucleotide sequence