Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0573 and PP_0574 are separated by 72 nucleotides PP_0574 and PP_0575 are separated by 118 nucleotides PP_0575 and PP_0576 are separated by 305 nucleotides
PP_0573: PP_0573 - conserved protein of unknown function, at 670,946 to 672,670
_0573
PP_0574: PP_0574 - DNA-binding response regulator, LuxR family, at 672,743 to 673,519
_0574
PP_0575: PP_0575 - conserved membrane protein of unknown function, at 673,638 to 674,108
_0575
PP_0576: PP_0576 - putative Lipoprotein, at 674,414 to 674,983
_0576
Position (kb) 672
673
674 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 671.807 kb on + strand at 671.807 kb on + strand, within PP_0573 at 671.811 kb on - strand, within PP_0573 at 671.825 kb on + strand, within PP_0573 at 671.826 kb on - strand, within PP_0573 at 671.826 kb on - strand, within PP_0573 at 671.826 kb on - strand, within PP_0573 at 671.835 kb on - strand, within PP_0573 at 671.835 kb on - strand, within PP_0573 at 671.904 kb on + strand, within PP_0573 at 671.904 kb on + strand, within PP_0573 at 671.904 kb on + strand, within PP_0573 at 671.905 kb on - strand, within PP_0573 at 671.955 kb on - strand, within PP_0573 at 672.023 kb on + strand, within PP_0573 at 672.023 kb on + strand, within PP_0573 at 672.080 kb on + strand, within PP_0573 at 672.080 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.089 kb on + strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.090 kb on - strand, within PP_0573 at 672.210 kb on - strand, within PP_0573 at 672.210 kb on - strand, within PP_0573 at 672.299 kb on + strand, within PP_0573 at 672.299 kb on + strand, within PP_0573 at 672.299 kb on + strand, within PP_0573 at 672.413 kb on + strand, within PP_0573 at 672.425 kb on + strand, within PP_0573 at 672.426 kb on - strand, within PP_0573 at 672.426 kb on - strand, within PP_0573 at 672.439 kb on + strand, within PP_0573 at 672.440 kb on - strand, within PP_0573 at 672.440 kb on - strand, within PP_0573 at 672.464 kb on + strand, within PP_0573 at 672.464 kb on + strand, within PP_0573 at 672.464 kb on + strand, within PP_0573 at 672.465 kb on - strand, within PP_0573 at 672.496 kb on + strand, within PP_0573 at 672.497 kb on - strand, within PP_0573 at 672.669 kb on - strand at 672.669 kb on - strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.679 kb on + strand at 672.680 kb on - strand at 672.680 kb on - strand at 672.680 kb on - strand at 672.728 kb on - strand at 672.728 kb on - strand at 672.728 kb on - strand at 672.820 kb on + strand at 672.820 kb on + strand at 672.820 kb on + strand at 672.820 kb on + strand at 672.821 kb on - strand, within PP_0574 at 672.821 kb on - strand, within PP_0574 at 672.836 kb on + strand, within PP_0574 at 672.836 kb on + strand at 672.849 kb on + strand, within PP_0574 at 672.849 kb on + strand, within PP_0574 at 672.849 kb on + strand, within PP_0574 at 672.849 kb on + strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.850 kb on - strand, within PP_0574 at 672.897 kb on + strand, within PP_0574 at 672.898 kb on - strand, within PP_0574 at 672.917 kb on + strand, within PP_0574 at 673.191 kb on + strand, within PP_0574 at 673.191 kb on + strand, within PP_0574 at 673.191 kb on + strand, within PP_0574 at 673.192 kb on - strand, within PP_0574 at 673.192 kb on - strand, within PP_0574 at 673.194 kb on + strand, within PP_0574 at 673.194 kb on + strand, within PP_0574 at 673.195 kb on - strand, within PP_0574 at 673.195 kb on - strand, within PP_0574 at 673.215 kb on - strand, within PP_0574 at 673.215 kb on - strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.380 kb on + strand, within PP_0574 at 673.381 kb on - strand, within PP_0574 at 673.381 kb on - strand, within PP_0574 at 673.381 kb on - strand, within PP_0574 at 673.381 kb on - strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.496 kb on + strand at 673.496 kb on + strand at 673.497 kb on - strand at 673.497 kb on - strand at 673.537 kb on + strand at 673.538 kb on - strand at 673.539 kb on + strand at 673.574 kb on + strand at 673.574 kb on + strand at 673.575 kb on - strand at 673.580 kb on + strand at 673.581 kb on - strand at 673.597 kb on + strand at 673.597 kb on + strand at 673.597 kb on + strand at 673.598 kb on - strand at 673.598 kb on - strand at 673.598 kb on - strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.602 kb on - strand at 673.602 kb on - strand at 673.602 kb on - strand at 673.612 kb on + strand at 673.612 kb on + strand at 673.612 kb on + strand at 673.613 kb on - strand at 673.613 kb on - strand at 673.613 kb on - strand at 673.674 kb on + strand at 673.681 kb on + strand at 673.740 kb on + strand, within PP_0575 at 673.741 kb on - strand, within PP_0575 at 673.795 kb on - strand, within PP_0575 at 673.831 kb on + strand, within PP_0575 at 673.831 kb on + strand, within PP_0575 at 673.832 kb on - strand, within PP_0575 at 673.832 kb on - strand, within PP_0575 at 673.903 kb on + strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 674.041 kb on - strand, within PP_0575 at 674.176 kb on - strand at 674.176 kb on - strand at 674.282 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.298 kb on - strand at 674.364 kb on + strand at 674.416 kb on - strand at 674.436 kb on + strand at 674.436 kb on + strand at 674.437 kb on - strand at 674.461 kb on + strand at 674.462 kb on - strand at 674.502 kb on + strand, within PP_0576
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 671,807 + -0.7 671,807 + PP_0573 0.50 +1.0 671,811 - PP_0573 0.50 -0.9 671,825 + PP_0573 0.51 +0.9 671,826 - PP_0573 0.51 +0.1 671,826 - PP_0573 0.51 +2.1 671,826 - PP_0573 0.51 -1.4 671,835 - PP_0573 0.52 -1.5 671,835 - PP_0573 0.52 +0.9 671,904 + PP_0573 0.56 +0.8 671,904 + PP_0573 0.56 +0.3 671,904 + PP_0573 0.56 -1.3 671,905 - PP_0573 0.56 +1.1 671,955 - PP_0573 0.58 -0.4 672,023 + PP_0573 0.62 -3.2 672,023 + PP_0573 0.62 -4.7 672,080 + PP_0573 0.66 +0.3 672,080 + PP_0573 0.66 -1.2 672,089 + PP_0573 0.66 +0.2 672,089 + PP_0573 0.66 +1.6 672,089 + PP_0573 0.66 +0.5 672,089 + PP_0573 0.66 +0.9 672,089 + PP_0573 0.66 -0.0 672,089 + PP_0573 0.66 -0.6 672,089 + PP_0573 0.66 +0.1 672,089 + PP_0573 0.66 +0.3 672,089 + PP_0573 0.66 +4.0 672,090 - PP_0573 0.66 +0.8 672,090 - PP_0573 0.66 -0.7 672,090 - PP_0573 0.66 -1.1 672,090 - PP_0573 0.66 +1.5 672,090 - PP_0573 0.66 -0.3 672,090 - PP_0573 0.66 -1.7 672,210 - PP_0573 0.73 -0.2 672,210 - PP_0573 0.73 -0.3 672,299 + PP_0573 0.78 +0.7 672,299 + PP_0573 0.78 +0.1 672,299 + PP_0573 0.78 +3.3 672,413 + PP_0573 0.85 -1.4 672,425 + PP_0573 0.86 -0.4 672,426 - PP_0573 0.86 +1.8 672,426 - PP_0573 0.86 +0.5 672,439 + PP_0573 0.87 +3.7 672,440 - PP_0573 0.87 -2.0 672,440 - PP_0573 0.87 -2.5 672,464 + PP_0573 0.88 +0.0 672,464 + PP_0573 0.88 +0.6 672,464 + PP_0573 0.88 +1.6 672,465 - PP_0573 0.88 +2.8 672,496 + PP_0573 0.90 +1.2 672,497 - PP_0573 0.90 -0.6 672,669 - +0.0 672,669 - +1.3 672,679 + -0.2 672,679 + -1.0 672,679 + -0.0 672,679 + +0.3 672,679 + -0.0 672,679 + -0.2 672,680 - +0.3 672,680 - -3.1 672,680 - +3.8 672,728 - +1.1 672,728 - +0.3 672,728 - -0.3 672,820 + +1.1 672,820 + +0.6 672,820 + +1.3 672,820 + -1.0 672,821 - PP_0574 0.10 +1.3 672,821 - PP_0574 0.10 +1.1 672,836 + PP_0574 0.12 +0.6 672,836 + -1.7 672,849 + PP_0574 0.14 -0.7 672,849 + PP_0574 0.14 +1.0 672,849 + PP_0574 0.14 +1.6 672,849 + PP_0574 0.14 +0.4 672,850 - PP_0574 0.14 +0.2 672,850 - PP_0574 0.14 +0.3 672,850 - PP_0574 0.14 -0.0 672,850 - PP_0574 0.14 +0.3 672,850 - PP_0574 0.14 +0.0 672,850 - PP_0574 0.14 +1.1 672,897 + PP_0574 0.20 +1.9 672,898 - PP_0574 0.20 +1.0 672,917 + PP_0574 0.22 +1.1 673,191 + PP_0574 0.58 +0.4 673,191 + PP_0574 0.58 +0.3 673,191 + PP_0574 0.58 +0.7 673,192 - PP_0574 0.58 +1.5 673,192 - PP_0574 0.58 +1.6 673,194 + PP_0574 0.58 +3.3 673,194 + PP_0574 0.58 +1.1 673,195 - PP_0574 0.58 +0.4 673,195 - PP_0574 0.58 +1.4 673,215 - PP_0574 0.61 +0.8 673,215 - PP_0574 0.61 -1.0 673,380 + PP_0574 0.82 +1.0 673,380 + PP_0574 0.82 +2.7 673,380 + PP_0574 0.82 +0.4 673,380 + PP_0574 0.82 +1.6 673,380 + PP_0574 0.82 +0.7 673,380 + PP_0574 0.82 -0.8 673,380 + PP_0574 0.82 +1.3 673,381 - PP_0574 0.82 +1.0 673,381 - PP_0574 0.82 +0.8 673,381 - PP_0574 0.82 -0.0 673,381 - PP_0574 0.82 +0.4 673,425 + PP_0574 0.88 +5.1 673,425 + PP_0574 0.88 +0.6 673,425 + PP_0574 0.88 +0.8 673,425 + PP_0574 0.88 +0.5 673,425 + PP_0574 0.88 +1.3 673,426 - PP_0574 0.88 +1.8 673,426 - PP_0574 0.88 +1.9 673,426 - -2.4 673,426 - PP_0574 0.88 +0.3 673,426 - PP_0574 0.88 +0.6 673,496 + +4.2 673,496 + +0.0 673,497 - +1.1 673,497 - -0.6 673,537 + +0.7 673,538 - -0.3 673,539 + +1.0 673,574 + +0.2 673,574 + +1.4 673,575 - +0.1 673,580 + +3.8 673,581 - -4.3 673,597 + +1.1 673,597 + +2.2 673,597 + +3.1 673,598 - +0.4 673,598 - -0.5 673,598 - +0.3 673,601 + +0.3 673,601 + -0.3 673,601 + -0.1 673,601 + +0.5 673,601 + +1.4 673,601 + +4.1 673,601 + -1.4 673,602 - +0.3 673,602 - -0.2 673,602 - +0.7 673,612 + +0.0 673,612 + +0.3 673,612 + -0.7 673,613 - -4.4 673,613 - -0.8 673,613 - -0.2 673,674 + +0.4 673,681 + +0.3 673,740 + PP_0575 0.22 +0.1 673,741 - PP_0575 0.22 -0.1 673,795 - PP_0575 0.33 -4.1 673,831 + PP_0575 0.41 +1.8 673,831 + PP_0575 0.41 +0.5 673,832 - PP_0575 0.41 -0.8 673,832 - PP_0575 0.41 -3.7 673,903 + PP_0575 0.56 -0.1 673,904 - PP_0575 0.56 -4.6 673,904 - PP_0575 0.56 -2.2 673,904 - PP_0575 0.56 -2.7 674,041 - PP_0575 0.86 -2.2 674,176 - +1.4 674,176 - -1.2 674,282 + +0.1 674,293 + -0.2 674,293 + +1.9 674,293 + +1.1 674,293 + +2.7 674,293 + +0.7 674,293 + -0.1 674,294 - -0.7 674,294 - -0.7 674,294 - +0.6 674,294 - +0.9 674,294 - +0.5 674,294 - -0.8 674,294 - -0.4 674,294 - -0.6 674,294 - -0.7 674,297 + -0.4 674,297 + +0.3 674,297 + -1.2 674,297 + -0.4 674,298 - -3.6 674,364 + +1.0 674,416 - +2.5 674,436 + +0.3 674,436 + +0.1 674,437 - +0.3 674,461 + -0.8 674,462 - -1.1 674,502 + PP_0576 0.15 +0.7
Or see this region's nucleotide sequence