Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0418 and PP_0420 are separated by 367 nucleotides PP_0420 and PP_0421 are separated by 9 nucleotides PP_0421 and PP_0422 overlap by 4 nucleotides PP_0422 and PP_0423 are separated by 147 nucleotides
PP_0418: PP_0418 - Esterase EstP, at 507,121 to 509,010
_0418
PP_0420: PP_0420 - aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex, at 509,378 to 509,971
_0420
PP_0421: PP_0421 - Anthranilate phosphoribosyltransferase, at 509,981 to 511,030
_0421
PP_0422: PP_0422 - Indole-3-glycerol phosphate synthase, at 511,027 to 511,860
_0422
PP_0423: PP_0423 - conserved protein of unknown function, at 512,008 to 512,712
_0423
Position (kb)
509
510
511
512 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 509.036 kb on + strand at 509.108 kb on - strand at 509.108 kb on - strand at 509.115 kb on + strand at 509.115 kb on + strand at 509.115 kb on + strand at 509.116 kb on - strand at 509.116 kb on - strand at 509.116 kb on - strand at 509.116 kb on - strand at 509.140 kb on + strand at 509.140 kb on + strand at 509.140 kb on + strand at 509.141 kb on - strand at 509.155 kb on + strand at 509.155 kb on + strand at 509.156 kb on - strand at 509.156 kb on - strand at 509.156 kb on - strand at 509.168 kb on + strand at 509.168 kb on + strand at 509.168 kb on + strand at 509.169 kb on - strand at 509.205 kb on + strand at 509.246 kb on + strand at 509.247 kb on - strand at 509.247 kb on - strand at 509.356 kb on + strand at 509.371 kb on + strand at 509.382 kb on + strand at 509.399 kb on + strand at 509.399 kb on + strand at 509.415 kb on - strand at 509.415 kb on - strand at 509.429 kb on + strand at 509.524 kb on - strand, within PP_0420 at 509.524 kb on - strand, within PP_0420 at 509.610 kb on + strand, within PP_0420 at 509.610 kb on + strand, within PP_0420 at 509.610 kb on + strand, within PP_0420 at 509.610 kb on + strand, within PP_0420 at 509.610 kb on + strand, within PP_0420 at 509.610 kb on + strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.611 kb on - strand, within PP_0420 at 509.658 kb on + strand, within PP_0420 at 509.659 kb on - strand, within PP_0420 at 509.697 kb on + strand, within PP_0420 at 509.697 kb on + strand, within PP_0420 at 509.697 kb on + strand, within PP_0420 at 509.699 kb on + strand, within PP_0420 at 509.700 kb on - strand, within PP_0420 at 509.700 kb on - strand, within PP_0420 at 509.700 kb on - strand, within PP_0420 at 509.700 kb on - strand, within PP_0420 at 509.700 kb on - strand, within PP_0420 at 509.700 kb on - strand, within PP_0420 at 509.731 kb on + strand, within PP_0420 at 509.732 kb on - strand, within PP_0420 at 509.772 kb on + strand, within PP_0420 at 509.773 kb on - strand, within PP_0420 at 510.032 kb on - strand at 510.093 kb on + strand, within PP_0421 at 510.093 kb on + strand, within PP_0421 at 510.316 kb on + strand, within PP_0421 at 510.374 kb on + strand, within PP_0421 at 510.374 kb on - strand, within PP_0421 at 510.514 kb on + strand, within PP_0421 at 510.514 kb on + strand, within PP_0421 at 510.515 kb on - strand, within PP_0421 at 510.529 kb on + strand, within PP_0421 at 510.529 kb on + strand, within PP_0421 at 510.529 kb on + strand, within PP_0421 at 510.530 kb on - strand, within PP_0421 at 510.722 kb on + strand, within PP_0421 at 510.723 kb on - strand, within PP_0421 at 510.874 kb on + strand, within PP_0421 at 510.875 kb on - strand, within PP_0421 at 510.875 kb on - strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.894 kb on - strand, within PP_0421 at 510.930 kb on + strand at 510.931 kb on - strand at 510.948 kb on + strand at 510.949 kb on - strand at 510.949 kb on - strand at 510.949 kb on - strand at 510.949 kb on - strand at 510.949 kb on - strand at 510.998 kb on - strand at 510.998 kb on - strand at 510.998 kb on - strand at 511.005 kb on + strand at 511.005 kb on + strand at 511.006 kb on - strand at 511.279 kb on + strand, within PP_0422 at 511.279 kb on + strand, within PP_0422 at 511.327 kb on + strand, within PP_0422 at 511.348 kb on + strand, within PP_0422 at 511.349 kb on - strand, within PP_0422 at 511.349 kb on - strand, within PP_0422 at 511.587 kb on + strand, within PP_0422 at 511.587 kb on + strand, within PP_0422 at 511.705 kb on - strand, within PP_0422 at 511.902 kb on - strand at 511.931 kb on + strand at 511.931 kb on + strand at 511.997 kb on + strand at 511.997 kb on + strand at 511.997 kb on + strand at 511.998 kb on - strand at 511.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 509,036 + -2.6 509,108 - +0.8 509,108 - -3.2 509,115 + -0.1 509,115 + -1.6 509,115 + +1.0 509,116 - -0.3 509,116 - -1.5 509,116 - -1.6 509,116 - +2.7 509,140 + -0.3 509,140 + +0.9 509,140 + +0.4 509,141 - -2.5 509,155 + +0.2 509,155 + +0.5 509,156 - -4.0 509,156 - -0.6 509,156 - -1.6 509,168 + +2.7 509,168 + +0.0 509,168 + -0.3 509,169 - -3.8 509,205 + -2.4 509,246 + -1.2 509,247 - -2.2 509,247 - -4.8 509,356 + -2.2 509,371 + +1.8 509,382 + -1.9 509,399 + -3.9 509,399 + -4.5 509,415 - -4.2 509,415 - -3.8 509,429 + -1.6 509,524 - PP_0420 0.25 -2.2 509,524 - PP_0420 0.25 -5.0 509,610 + PP_0420 0.39 -1.0 509,610 + PP_0420 0.39 -5.7 509,610 + PP_0420 0.39 -4.7 509,610 + PP_0420 0.39 -4.2 509,610 + PP_0420 0.39 -3.5 509,610 + PP_0420 0.39 +0.4 509,611 - PP_0420 0.39 -3.7 509,611 - PP_0420 0.39 -4.4 509,611 - PP_0420 0.39 -4.2 509,611 - PP_0420 0.39 -2.2 509,611 - PP_0420 0.39 -4.3 509,611 - PP_0420 0.39 -3.9 509,611 - PP_0420 0.39 -2.8 509,611 - PP_0420 0.39 -3.7 509,611 - PP_0420 0.39 -5.1 509,658 + PP_0420 0.47 -3.3 509,659 - PP_0420 0.47 -3.4 509,697 + PP_0420 0.54 +0.4 509,697 + PP_0420 0.54 -4.3 509,697 + PP_0420 0.54 -4.4 509,699 + PP_0420 0.54 -2.8 509,700 - PP_0420 0.54 -4.4 509,700 - PP_0420 0.54 -2.8 509,700 - PP_0420 0.54 -4.5 509,700 - PP_0420 0.54 +0.4 509,700 - PP_0420 0.54 -3.2 509,700 - PP_0420 0.54 -4.6 509,731 + PP_0420 0.59 -3.4 509,732 - PP_0420 0.60 -2.6 509,772 + PP_0420 0.66 -5.1 509,773 - PP_0420 0.66 -3.1 510,032 - -3.8 510,093 + PP_0421 0.11 -4.3 510,093 + PP_0421 0.11 -3.8 510,316 + PP_0421 0.32 -2.2 510,374 + PP_0421 0.37 -1.9 510,374 - PP_0421 0.37 -4.9 510,514 + PP_0421 0.51 +0.4 510,514 + PP_0421 0.51 -3.8 510,515 - PP_0421 0.51 -3.5 510,529 + PP_0421 0.52 -4.2 510,529 + PP_0421 0.52 +0.4 510,529 + PP_0421 0.52 -2.8 510,530 - PP_0421 0.52 -2.8 510,722 + PP_0421 0.71 -3.9 510,723 - PP_0421 0.71 -2.8 510,874 + PP_0421 0.85 -2.6 510,875 - PP_0421 0.85 -2.2 510,875 - PP_0421 0.85 -1.2 510,893 + PP_0421 0.87 -5.1 510,893 + PP_0421 0.87 -3.2 510,893 + PP_0421 0.87 -4.0 510,893 + PP_0421 0.87 -2.6 510,893 + PP_0421 0.87 -2.2 510,894 - PP_0421 0.87 +0.4 510,930 + -5.2 510,931 - -3.1 510,948 + -4.0 510,949 - -2.2 510,949 - +0.4 510,949 - -2.2 510,949 - +0.4 510,949 - -3.4 510,998 - -3.2 510,998 - +0.4 510,998 - -4.7 511,005 + +0.4 511,005 + +0.9 511,006 - -5.3 511,279 + PP_0422 0.30 -3.4 511,279 + PP_0422 0.30 -3.7 511,327 + PP_0422 0.36 -4.5 511,348 + PP_0422 0.38 -4.7 511,349 - PP_0422 0.39 -4.1 511,349 - PP_0422 0.39 -3.8 511,587 + PP_0422 0.67 -1.9 511,587 + PP_0422 0.67 -1.6 511,705 - PP_0422 0.81 -0.6 511,902 - +0.4 511,931 + -0.4 511,931 + -1.1 511,997 + +0.7 511,997 + +1.0 511,997 + +0.2 511,998 - +1.2 511,998 - -3.1
Or see this region's nucleotide sequence