Strain Fitness in Pseudomonas putida KT2440 around PP_0385

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
465,141	+				-1.5
465,143	+				+0.6
465,143	+				-0.5
465,144	-				+2.3
465,144	-				-0.8
465,144	-				+0.5
465,166	+				+0.4
465,167	-				-0.6
465,184	+				+0.0
465,188	+				+0.4
465,189	-				+2.3
465,189	-				+0.6
465,189	-				-1.0
465,189	-				+1.7
465,214	-				+3.0
465,241	+				+2.4
465,242	-				+2.7
465,271	+				+0.8
465,271	+				+1.1
465,271	+				+2.0
465,272	-				+0.8
465,307	+				+2.2
465,308	-				+2.4
465,486	+		PP_0384	0.29	+0.4
465,486	+		PP_0384	0.29	+1.4
465,487	-		PP_0384	0.30	+0.8
465,487	-		PP_0384	0.30	+0.6
465,487	-				+0.4
465,504	-		PP_0384	0.33	-1.0
465,591	+		PP_0384	0.52	-0.1
465,591	+		PP_0384	0.52	+3.0
465,592	-		PP_0384	0.52	+4.3
465,592	-		PP_0384	0.52	-0.2
465,592	-		PP_0384	0.52	-1.6
465,592	-		PP_0384	0.52	-1.7
465,632	+		PP_0384	0.61	-0.7
465,640	-		PP_0384	0.63	-0.4
465,649	+		PP_0384	0.65	+0.4
465,649	+		PP_0384	0.65	-0.3
465,649	+		PP_0384	0.65	-2.9
465,649	+		PP_0384	0.65	+0.4
465,650	-		PP_0384	0.65	+0.4
465,650	-		PP_0384	0.65	+1.6
465,650	-		PP_0384	0.65	+0.5
465,823	-				+0.8
465,841	+				-0.8
465,874	+				+0.9
465,874	+				+2.4
465,875	-				+0.4
465,875	-				+3.2
465,875	-				-2.0
466,067	+		PP_0385	0.12	-0.6
466,149	+		PP_0385	0.27	+0.6
466,149	+		PP_0385	0.27	+2.4
466,218	+		PP_0385	0.39	+0.0
466,299	+		PP_0385	0.54	+2.0
466,300	-		PP_0385	0.54	+3.0
466,374	+		PP_0385	0.68	-2.4
466,375	-		PP_0385	0.68	+1.1
466,456	+		PP_0385	0.82	+1.1
466,457	-		PP_0385	0.83	-0.6
466,512	+				+2.0
466,564	+				-0.5
466,565	-				+0.6
466,565	-				+1.6
466,616	+				-1.0
466,616	+				-0.1
466,688	-				-0.3
466,728	-				-0.1
466,756	+				-0.6
466,865	+				+1.3
466,865	+				+0.4
466,903	+				-0.2
466,904	-				+0.8
466,904	-				-1.1
466,922	+		PP_5445	0.15	+0.1
466,923	-		PP_5445	0.15	-0.9
467,006	-		PP_5445	0.64	+2.7
467,051	+				-3.0
467,051	+				-3.0
467,052	-				+1.4
467,070	-				-2.0
467,202	-				+0.4
467,202	-				+2.4
467,215	-				+3.6
467,215	-				+1.6
467,217	-				+0.4
467,262	-				+0.4
467,262	-				+0.0
467,262	-				+0.9
467,317	-				+0.4
467,317	-				-0.3
467,317	-				-0.6
467,520	+				-0.6
467,521	-				+0.2
467,521	-				+2.7