Strain Fitness in Pseudomonas putida KT2440 around PP_0364

Experiment: pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0363 and PP_0364 overlap by 8 nucleotidesPP_0364 and PP_0365 overlap by 8 nucleotidesPP_0365 and PP_0366 are separated by 10 nucleotides PP_0363: PP_0363 - 8-amino-7-oxononanoate synthase, at 441,120 to 442,292 _0363 PP_0364: PP_0364 - pimeloyl-[acp] methyl ester esterase, at 442,285 to 443,016 _0364 PP_0365: PP_0365 - Malonyl-[acyl-carrier protein] O-methyltransferase, at 443,009 to 443,827 _0365 PP_0366: PP_0366 - dethiobiotin synthetase, at 443,838 to 444,518 _0366 Position (kb) 442 443 444Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 441.349 kb on + strand, within PP_0363at 441.350 kb on - strand, within PP_0363at 441.350 kb on - strand, within PP_0363at 441.438 kb on + strand, within PP_0363at 441.438 kb on + strand, within PP_0363at 441.438 kb on + strand, within PP_0363at 441.439 kb on - strand, within PP_0363at 441.439 kb on - strand, within PP_0363at 441.439 kb on - strand, within PP_0363at 441.439 kb on - strand, within PP_0363at 441.440 kb on + strand, within PP_0363at 441.440 kb on + strand, within PP_0363at 441.441 kb on - strand, within PP_0363at 441.618 kb on - strand, within PP_0363at 441.799 kb on + strand, within PP_0363at 441.799 kb on + strand, within PP_0363at 441.799 kb on + strand, within PP_0363at 441.800 kb on - strand, within PP_0363at 441.886 kb on + strand, within PP_0363at 441.886 kb on + strand, within PP_0363at 441.887 kb on - strand, within PP_0363at 441.903 kb on + strand, within PP_0363at 441.903 kb on + strand, within PP_0363at 441.905 kb on + strand, within PP_0363at 441.905 kb on + strand, within PP_0363at 441.905 kb on + strandat 441.905 kb on + strand, within PP_0363at 441.905 kb on + strand, within PP_0363at 441.905 kb on + strand, within PP_0363at 441.906 kb on - strand, within PP_0363at 441.906 kb on - strand, within PP_0363at 441.906 kb on - strand, within PP_0363at 441.906 kb on - strand, within PP_0363at 441.909 kb on + strand, within PP_0363at 441.909 kb on + strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 442.237 kb on + strandat 442.238 kb on - strandat 442.238 kb on - strandat 442.238 kb on - strandat 442.290 kb on + strandat 442.290 kb on + strandat 442.291 kb on - strandat 442.304 kb on + strandat 442.304 kb on + strandat 442.305 kb on - strandat 442.305 kb on - strandat 442.305 kb on - strandat 442.385 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.660 kb on - strand, within PP_0364at 442.677 kb on + strand, within PP_0364at 442.677 kb on + strand, within PP_0364at 442.678 kb on - strand, within PP_0364at 442.759 kb on + strand, within PP_0364at 442.759 kb on + strand, within PP_0364at 442.788 kb on + strand, within PP_0364at 442.819 kb on + strand, within PP_0364at 442.819 kb on + strand, within PP_0364at 442.862 kb on + strand, within PP_0364at 442.863 kb on - strand, within PP_0364at 442.911 kb on - strand, within PP_0364at 442.911 kb on - strand, within PP_0364at 442.957 kb on + strandat 443.097 kb on - strand, within PP_0365at 443.127 kb on + strand, within PP_0365at 443.312 kb on + strand, within PP_0365at 443.312 kb on + strand, within PP_0365at 443.313 kb on - strand, within PP_0365at 443.455 kb on - strand, within PP_0365at 443.455 kb on - strand, within PP_0365at 443.535 kb on + strand, within PP_0365at 443.536 kb on - strand, within PP_0365at 443.536 kb on - strand, within PP_0365at 443.536 kb on - strand, within PP_0365at 443.561 kb on + strand, within PP_0365at 443.562 kb on - strand, within PP_0365at 443.562 kb on - strand, within PP_0365at 443.562 kb on - strand, within PP_0365at 443.622 kb on + strand, within PP_0365at 443.622 kb on + strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.623 kb on - strand, within PP_0365at 443.747 kb on + strandat 443.747 kb on + strandat 443.747 kb on + strandat 443.747 kb on + strandat 443.747 kb on + strandat 443.748 kb on - strandat 443.748 kb on - strandat 443.748 kb on - strandat 443.748 kb on - strandat 443.786 kb on + strandat 443.786 kb on + strandat 443.786 kb on + strandat 443.787 kb on - strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.798 kb on + strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.799 kb on - strandat 443.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 4
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441,349 + PP_0363 0.20 -1.6
441,350 - PP_0363 0.20 -0.9
441,350 - PP_0363 0.20 -2.7
441,438 + PP_0363 0.27 -0.9
441,438 + PP_0363 0.27 +0.4
441,438 + PP_0363 0.27 -1.3
441,439 - PP_0363 0.27 -0.9
441,439 - PP_0363 0.27 +0.4
441,439 - PP_0363 0.27 -0.6
441,439 - PP_0363 0.27 +0.3
441,440 + PP_0363 0.27 -0.2
441,440 + PP_0363 0.27 +1.2
441,441 - PP_0363 0.27 -2.8
441,618 - PP_0363 0.42 -0.7
441,799 + PP_0363 0.58 +0.7
441,799 + PP_0363 0.58 -2.2
441,799 + PP_0363 0.58 -1.1
441,800 - PP_0363 0.58 +0.4
441,886 + PP_0363 0.65 +0.9
441,886 + PP_0363 0.65 +1.4
441,887 - PP_0363 0.65 -2.2
441,903 + PP_0363 0.67 -2.4
441,903 + PP_0363 0.67 -0.3
441,905 + PP_0363 0.67 -1.6
441,905 + PP_0363 0.67 +0.4
441,905 + -0.6
441,905 + PP_0363 0.67 +0.8
441,905 + PP_0363 0.67 -1.2
441,905 + PP_0363 0.67 +0.1
441,906 - PP_0363 0.67 -1.1
441,906 - PP_0363 0.67 -0.8
441,906 - PP_0363 0.67 +1.1
441,906 - PP_0363 0.67 +0.8
441,909 + PP_0363 0.67 -2.6
441,909 + PP_0363 0.67 -1.9
441,910 - PP_0363 0.67 -0.8
441,910 - PP_0363 0.67 +0.8
441,910 - PP_0363 0.67 +0.4
441,910 - PP_0363 0.67 -1.2
441,910 - PP_0363 0.67 -0.6
441,910 - PP_0363 0.67 -2.2
441,910 - PP_0363 0.67 -1.5
442,237 + -2.1
442,238 - -1.9
442,238 - +0.3
442,238 - -3.9
442,290 + -1.5
442,290 + -0.3
442,291 - +0.4
442,304 + +0.7
442,304 + -0.1
442,305 - -0.6
442,305 - +0.4
442,305 - -2.2
442,385 + PP_0364 0.14 -1.3
442,650 + PP_0364 0.50 +0.3
442,650 + PP_0364 0.50 +1.7
442,650 + PP_0364 0.50 +0.4
442,651 - PP_0364 0.50 +0.4
442,651 - PP_0364 0.50 +0.4
442,651 - PP_0364 0.50 -4.3
442,651 - PP_0364 0.50 -1.2
442,660 - PP_0364 0.51 +0.4
442,677 + PP_0364 0.54 -0.9
442,677 + PP_0364 0.54 -1.4
442,678 - PP_0364 0.54 -2.9
442,759 + PP_0364 0.65 +0.4
442,759 + PP_0364 0.65 -0.8
442,788 + PP_0364 0.69 -1.6
442,819 + PP_0364 0.73 -1.4
442,819 + PP_0364 0.73 -3.4
442,862 + PP_0364 0.79 +0.8
442,863 - PP_0364 0.79 -2.9
442,911 - PP_0364 0.86 -1.6
442,911 - PP_0364 0.86 -2.4
442,957 + -3.4
443,097 - PP_0365 0.11 -0.4
443,127 + PP_0365 0.14 -0.4
443,312 + PP_0365 0.37 -0.5
443,312 + PP_0365 0.37 -2.0
443,313 - PP_0365 0.37 -0.6
443,455 - PP_0365 0.54 -0.5
443,455 - PP_0365 0.54 +0.2
443,535 + PP_0365 0.64 -2.7
443,536 - PP_0365 0.64 -4.2
443,536 - PP_0365 0.64 -1.7
443,536 - PP_0365 0.64 -3.2
443,561 + PP_0365 0.67 +0.1
443,562 - PP_0365 0.68 -0.2
443,562 - PP_0365 0.68 +0.0
443,562 - PP_0365 0.68 -1.2
443,622 + PP_0365 0.75 -0.6
443,622 + PP_0365 0.75 -2.8
443,623 - PP_0365 0.75 +0.4
443,623 - PP_0365 0.75 -0.6
443,623 - PP_0365 0.75 -3.2
443,623 - PP_0365 0.75 +1.4
443,623 - PP_0365 0.75 +1.2
443,623 - PP_0365 0.75 -0.1
443,623 - PP_0365 0.75 -1.6
443,623 - PP_0365 0.75 -0.9
443,623 - PP_0365 0.75 -0.2
443,623 - PP_0365 0.75 -0.2
443,623 - PP_0365 0.75 +0.7
443,747 + +0.4
443,747 + -0.8
443,747 + -3.2
443,747 + +0.4
443,747 + -3.6
443,748 - -3.3
443,748 - -3.3
443,748 - +3.2
443,748 - -0.9
443,786 + -0.5
443,786 + -1.2
443,786 + -0.8
443,787 - +1.6
443,798 + +0.1
443,798 + -0.6
443,798 + -0.6
443,798 + -1.9
443,798 + +1.1
443,798 + -0.9
443,799 - -0.6
443,799 - -0.7
443,799 - -0.1
443,799 - -1.0
443,799 - -0.1
443,799 - -1.0
443,826 - -0.7

Or see this region's nucleotide sequence