Strain Fitness in Pseudomonas putida KT2440 around PP_0165

Experiment: pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0163 and PP_0164 are separated by 272 nucleotidesPP_0164 and PP_0165 are separated by 10 nucleotidesPP_0165 and PP_0166 are separated by 156 nucleotides PP_0163: PP_0163 - putative transcriptional regulator, at 186,227 to 186,916 _0163 PP_0164: PP_0164 - conserved protein of unknown function, at 187,189 to 187,881 _0164 PP_0165: PP_0165 - GGDEF domain protein, at 187,892 to 189,838 _0165 PP_0166: PP_0166 - HlyD family secretion protein, at 189,995 to 191,371 _0166 Position (kb) 187 188 189 190Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 186.942 kb on + strandat 186.942 kb on + strandat 186.960 kb on + strandat 186.960 kb on + strandat 186.961 kb on - strandat 186.961 kb on - strandat 186.963 kb on + strandat 186.963 kb on + strandat 186.964 kb on - strandat 186.964 kb on - strandat 187.026 kb on - strandat 187.026 kb on - strandat 187.026 kb on - strandat 187.061 kb on + strandat 187.217 kb on + strandat 187.217 kb on + strandat 187.225 kb on + strandat 187.225 kb on + strandat 187.226 kb on - strandat 187.226 kb on - strandat 187.331 kb on + strand, within PP_0164at 187.331 kb on + strand, within PP_0164at 187.331 kb on + strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.332 kb on - strand, within PP_0164at 187.448 kb on - strand, within PP_0164at 187.484 kb on - strand, within PP_0164at 187.484 kb on - strand, within PP_0164at 187.552 kb on + strand, within PP_0164at 187.603 kb on + strand, within PP_0164at 187.603 kb on + strand, within PP_0164at 187.648 kb on + strand, within PP_0164at 187.649 kb on - strand, within PP_0164at 187.651 kb on + strand, within PP_0164at 187.652 kb on - strand, within PP_0164at 187.652 kb on - strand, within PP_0164at 187.652 kb on - strand, within PP_0164at 187.652 kb on - strand, within PP_0164at 187.741 kb on + strand, within PP_0164at 187.742 kb on - strand, within PP_0164at 187.742 kb on - strand, within PP_0164at 187.742 kb on - strand, within PP_0164at 187.804 kb on - strand, within PP_0164at 187.876 kb on + strandat 187.991 kb on + strandat 187.991 kb on + strandat 187.992 kb on - strandat 187.992 kb on - strandat 187.992 kb on - strandat 188.114 kb on + strand, within PP_0165at 188.114 kb on + strand, within PP_0165at 188.115 kb on - strand, within PP_0165at 188.115 kb on - strand, within PP_0165at 188.117 kb on + strand, within PP_0165at 188.117 kb on + strand, within PP_0165at 188.117 kb on + strand, within PP_0165at 188.118 kb on - strand, within PP_0165at 188.426 kb on + strand, within PP_0165at 188.427 kb on - strand, within PP_0165at 188.433 kb on + strand, within PP_0165at 188.433 kb on + strand, within PP_0165at 188.433 kb on + strand, within PP_0165at 188.434 kb on - strand, within PP_0165at 188.434 kb on - strand, within PP_0165at 188.434 kb on - strand, within PP_0165at 188.449 kb on + strand, within PP_0165at 188.449 kb on + strand, within PP_0165at 188.502 kb on + strand, within PP_0165at 188.511 kb on + strand, within PP_0165at 188.511 kb on + strand, within PP_0165at 188.512 kb on - strand, within PP_0165at 188.636 kb on + strand, within PP_0165at 188.637 kb on - strand, within PP_0165at 188.664 kb on + strand, within PP_0165at 188.694 kb on - strand, within PP_0165at 188.755 kb on + strand, within PP_0165at 188.778 kb on + strand, within PP_0165at 188.779 kb on - strand, within PP_0165at 188.797 kb on + strand, within PP_0165at 188.797 kb on + strand, within PP_0165at 188.797 kb on + strand, within PP_0165at 188.797 kb on + strand, within PP_0165at 188.798 kb on - strand, within PP_0165at 188.895 kb on + strand, within PP_0165at 188.895 kb on + strand, within PP_0165at 188.896 kb on - strand, within PP_0165at 188.896 kb on - strandat 188.896 kb on - strand, within PP_0165at 188.896 kb on - strand, within PP_0165at 188.956 kb on + strand, within PP_0165at 188.974 kb on + strand, within PP_0165at 188.974 kb on + strand, within PP_0165at 188.974 kb on + strand, within PP_0165at 188.974 kb on + strand, within PP_0165at 188.975 kb on - strand, within PP_0165at 188.975 kb on - strand, within PP_0165at 188.975 kb on - strand, within PP_0165at 188.975 kb on - strand, within PP_0165at 188.976 kb on + strand, within PP_0165at 188.976 kb on + strand, within PP_0165at 188.977 kb on - strand, within PP_0165at 188.977 kb on - strand, within PP_0165at 188.977 kb on - strand, within PP_0165at 188.977 kb on - strand, within PP_0165at 189.078 kb on + strand, within PP_0165at 189.078 kb on + strand, within PP_0165at 189.078 kb on + strand, within PP_0165at 189.079 kb on - strand, within PP_0165at 189.192 kb on + strand, within PP_0165at 189.192 kb on + strand, within PP_0165at 189.216 kb on + strand, within PP_0165at 189.232 kb on + strand, within PP_0165at 189.233 kb on - strand, within PP_0165at 189.647 kb on + strandat 189.648 kb on - strandat 189.716 kb on - strandat 189.789 kb on + strandat 189.860 kb on + strandat 189.860 kb on + strandat 189.861 kb on - strandat 189.934 kb on + strandat 189.934 kb on + strandat 189.935 kb on - strandat 189.935 kb on - strandat 189.964 kb on + strandat 189.965 kb on - strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.048 kb on - strandat 190.168 kb on - strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.174 kb on + strand, within PP_0166at 190.174 kb on + strand, within PP_0166at 190.174 kb on + strand, within PP_0166at 190.175 kb on - strand, within PP_0166at 190.175 kb on - strand, within PP_0166at 190.175 kb on - strand, within PP_0166at 190.175 kb on - strand, within PP_0166at 190.195 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.243 kb on - strand, within PP_0166at 190.243 kb on - strand, within PP_0166at 190.251 kb on + strand, within PP_0166at 190.251 kb on + strand, within PP_0166at 190.252 kb on - strand, within PP_0166at 190.252 kb on - strand, within PP_0166at 190.758 kb on + strand, within PP_0166at 190.758 kb on + strand, within PP_0166at 190.759 kb on - strand, within PP_0166at 190.759 kb on - strand, within PP_0166at 190.779 kb on + strand, within PP_0166

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 4
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186,942 + +0.5
186,942 + +2.4
186,960 + -0.1
186,960 + +1.6
186,961 - +0.3
186,961 - +1.0
186,963 + -0.5
186,963 + -0.7
186,964 - +3.3
186,964 - +4.1
187,026 - +3.0
187,026 - +1.3
187,026 - +1.7
187,061 + -0.7
187,217 + -2.1
187,217 + -1.6
187,225 + +3.6
187,225 + +1.6
187,226 - +5.1
187,226 - -0.3
187,331 + PP_0164 0.20 +0.4
187,331 + PP_0164 0.20 -1.0
187,331 + PP_0164 0.20 +0.1
187,332 - PP_0164 0.21 +0.4
187,332 - PP_0164 0.21 -1.1
187,332 - PP_0164 0.21 +0.4
187,332 - PP_0164 0.21 -0.0
187,332 - PP_0164 0.21 -0.3
187,448 - PP_0164 0.37 +0.4
187,484 - PP_0164 0.43 +0.3
187,484 - PP_0164 0.43 -0.2
187,552 + PP_0164 0.52 +0.4
187,603 + PP_0164 0.60 -1.9
187,603 + PP_0164 0.60 -0.8
187,648 + PP_0164 0.66 -2.8
187,649 - PP_0164 0.66 +2.7
187,651 + PP_0164 0.67 -2.6
187,652 - PP_0164 0.67 -0.3
187,652 - PP_0164 0.67 -0.3
187,652 - PP_0164 0.67 +0.4
187,652 - PP_0164 0.67 +1.4
187,741 + PP_0164 0.80 +0.4
187,742 - PP_0164 0.80 -2.2
187,742 - PP_0164 0.80 -4.9
187,742 - PP_0164 0.80 -1.0
187,804 - PP_0164 0.89 -2.5
187,876 + +2.4
187,991 + +2.9
187,991 + +0.6
187,992 - +1.1
187,992 - +1.4
187,992 - -3.3
188,114 + PP_0165 0.11 -0.8
188,114 + PP_0165 0.11 -0.4
188,115 - PP_0165 0.11 +1.1
188,115 - PP_0165 0.11 +0.6
188,117 + PP_0165 0.12 +1.1
188,117 + PP_0165 0.12 +1.2
188,117 + PP_0165 0.12 +0.4
188,118 - PP_0165 0.12 -0.0
188,426 + PP_0165 0.27 -0.3
188,427 - PP_0165 0.27 +2.4
188,433 + PP_0165 0.28 +0.5
188,433 + PP_0165 0.28 -0.1
188,433 + PP_0165 0.28 -0.1
188,434 - PP_0165 0.28 +0.6
188,434 - PP_0165 0.28 +0.4
188,434 - PP_0165 0.28 +1.5
188,449 + PP_0165 0.29 +1.0
188,449 + PP_0165 0.29 +1.3
188,502 + PP_0165 0.31 +0.7
188,511 + PP_0165 0.32 +3.0
188,511 + PP_0165 0.32 +0.1
188,512 - PP_0165 0.32 +4.5
188,636 + PP_0165 0.38 +2.6
188,637 - PP_0165 0.38 +1.6
188,664 + PP_0165 0.40 +2.0
188,694 - PP_0165 0.41 +0.4
188,755 + PP_0165 0.44 +0.4
188,778 + PP_0165 0.46 +0.2
188,779 - PP_0165 0.46 -0.2
188,797 + PP_0165 0.46 +0.5
188,797 + PP_0165 0.46 +0.9
188,797 + PP_0165 0.46 +0.2
188,797 + PP_0165 0.46 +5.1
188,798 - PP_0165 0.47 +0.9
188,895 + PP_0165 0.52 +0.3
188,895 + PP_0165 0.52 -0.4
188,896 - PP_0165 0.52 +1.4
188,896 - +0.4
188,896 - PP_0165 0.52 +1.1
188,896 - PP_0165 0.52 +1.8
188,956 + PP_0165 0.55 +2.7
188,974 + PP_0165 0.56 +0.7
188,974 + PP_0165 0.56 +1.7
188,974 + PP_0165 0.56 +0.1
188,974 + PP_0165 0.56 +0.5
188,975 - PP_0165 0.56 +1.7
188,975 - PP_0165 0.56 +1.7
188,975 - PP_0165 0.56 -0.5
188,975 - PP_0165 0.56 -0.6
188,976 + PP_0165 0.56 +2.5
188,976 + PP_0165 0.56 -0.2
188,977 - PP_0165 0.56 -0.4
188,977 - PP_0165 0.56 -1.8
188,977 - PP_0165 0.56 +0.7
188,977 - PP_0165 0.56 +0.7
189,078 + PP_0165 0.61 +1.0
189,078 + PP_0165 0.61 +0.8
189,078 + PP_0165 0.61 +1.6
189,079 - PP_0165 0.61 -0.9
189,192 + PP_0165 0.67 +3.9
189,192 + PP_0165 0.67 +1.2
189,216 + PP_0165 0.68 +0.1
189,232 + PP_0165 0.69 -1.1
189,233 - PP_0165 0.69 +0.5
189,647 + -0.2
189,648 - -0.6
189,716 - +3.0
189,789 + +1.4
189,860 + +0.3
189,860 + -0.4
189,861 - -1.0
189,934 + +0.4
189,934 + -2.1
189,935 - -0.5
189,935 - +0.2
189,964 + +0.4
189,965 - +0.6
190,047 + +0.6
190,047 + +2.2
190,047 + +2.9
190,047 + +2.9
190,047 + +1.7
190,047 + +1.1
190,048 - +1.4
190,168 - PP_0166 0.13 +1.6
190,170 + PP_0166 0.13 +4.7
190,170 + PP_0166 0.13 +2.2
190,170 + PP_0166 0.13 +2.0
190,170 + PP_0166 0.13 +3.8
190,170 + PP_0166 0.13 +2.2
190,170 + PP_0166 0.13 +3.7
190,170 + PP_0166 0.13 +1.1
190,170 + PP_0166 0.13 +2.2
190,171 - PP_0166 0.13 +1.4
190,171 - PP_0166 0.13 +2.1
190,171 - PP_0166 0.13 +3.3
190,171 - PP_0166 0.13 +5.7
190,171 - PP_0166 0.13 +1.4
190,171 - PP_0166 0.13 +3.2
190,174 + PP_0166 0.13 +2.1
190,174 + PP_0166 0.13 +2.3
190,174 + PP_0166 0.13 +1.3
190,175 - PP_0166 0.13 +2.6
190,175 - PP_0166 0.13 +1.5
190,175 - PP_0166 0.13 +2.2
190,175 - PP_0166 0.13 +1.5
190,195 + PP_0166 0.15 +0.9
190,242 + PP_0166 0.18 +2.9
190,242 + PP_0166 0.18 +0.9
190,242 + PP_0166 0.18 +1.3
190,242 + PP_0166 0.18 +1.6
190,242 + PP_0166 0.18 +1.6
190,242 + PP_0166 0.18 +1.1
190,242 + PP_0166 0.18 +2.4
190,243 - PP_0166 0.18 +3.1
190,243 - PP_0166 0.18 +4.3
190,251 + PP_0166 0.19 +0.9
190,251 + PP_0166 0.19 +2.5
190,252 - PP_0166 0.19 +0.8
190,252 - PP_0166 0.19 +1.4
190,758 + PP_0166 0.55 +2.6
190,758 + PP_0166 0.55 +2.2
190,759 - PP_0166 0.55 +3.1
190,759 - PP_0166 0.55 +2.2
190,779 + PP_0166 0.57 +2.7

Or see this region's nucleotide sequence