Strain Fitness in Pseudomonas putida KT2440 around PP_0114

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
117,852	+		PP_0112	0.70	-1.0
117,853	-		PP_0112	0.70	-0.4
117,918	+		PP_0112	0.78	-0.4
117,919	-		PP_0112	0.78	-0.5
117,919	-		PP_0112	0.78	+0.4
117,947	+		PP_0112	0.82	+2.5
118,022	-				-1.6
118,150	+				+0.1
118,150	+				+0.4
118,151	-				-0.2
118,151	-				-0.8
118,154	+				+0.6
118,209	+				+2.2
118,209	+				-0.2
118,221	+		PP_0113	0.11	-3.9
118,221	+		PP_0113	0.11	+1.0
118,221	+		PP_0113	0.11	-3.6
118,233	+		PP_0113	0.12	-0.4
118,234	-		PP_0113	0.13	+1.2
118,324	+		PP_0113	0.26	+0.6
118,354	-		PP_0113	0.31	-1.0
118,512	+		PP_0113	0.54	-0.2
118,551	-		PP_0113	0.60	-1.2
118,645	+		PP_0113	0.74	-0.5
118,645	+		PP_0113	0.74	+0.7
118,645	+		PP_0113	0.74	+1.7
118,646	-		PP_0113	0.74	+0.4
118,646	-		PP_0113	0.74	-0.2
118,716	+		PP_0113	0.84	-0.1
118,716	+		PP_0113	0.84	-0.7
118,837	+				-0.4
118,837	+				-1.0
118,837	+				+3.5
118,837	+				-1.2
118,837	+				+1.5
118,837	+				-0.6
118,837	+				-0.4
118,837	+				+3.4
118,838	-				+4.5
118,838	-				+2.0
118,838	-				+0.1
118,838	-				-3.1
118,838	-				-2.1
118,838	-				+1.4
118,838	-				-3.2
118,841	+				-2.9
118,841	+				+0.0
118,841	+				-1.4
118,841	+				+1.4
118,842	-				+0.1
118,842	-				+1.4
118,842	-				-4.5
118,842	-				-1.5
118,842	-				+0.5
118,939	+		PP_0114	0.12	+0.4
118,959	+		PP_0114	0.14	+0.4
118,959	+		PP_0114	0.14	+1.4
118,959	+		PP_0114	0.14	-0.0
118,960	-		PP_0114	0.14	-0.3
118,960	-		PP_0114	0.14	+0.4
119,004	+		PP_0114	0.18	+0.1
119,004	+		PP_0114	0.18	-1.9
119,004	+		PP_0114	0.18	-2.8
119,005	-		PP_0114	0.18	-1.4
119,005	-		PP_0114	0.18	-3.3
119,005	-		PP_0114	0.18	-3.7
119,005	-		PP_0114	0.18	-2.1
119,033	+		PP_0114	0.21	+0.4
119,336	+		PP_0114	0.51	-2.8
119,336	+		PP_0114	0.51	-0.9
119,336	+		PP_0114	0.51	-0.0
119,337	-		PP_0114	0.51	-1.8
119,453	+		PP_0114	0.63	-2.4
119,797	-				+0.2
119,803	+				-3.9
119,803	+				-1.1
119,803	+				+2.0
119,803	+				-2.3
119,803	+				-2.9
119,804	-				+2.4
119,804	-				+1.0
119,804	-				-1.6
119,804	-				+1.4
119,808	-				-0.1
119,808	-				+2.0
119,808	-				+1.0
119,830	-				+0.4
119,902	+				-1.6
119,903	-				-0.5
119,903	-				-1.8
119,919	+				-1.2
119,948	+				-0.7
119,948	+				+0.6
119,948	+				+0.2
120,001	+				-0.9
120,001	+				-0.2
120,002	-				+1.0
120,032	-				-1.1
120,367	+		PP_0115	0.15	-1.1
120,368	-		PP_0115	0.15	-0.8
120,515	-		PP_0115	0.22	+1.4
120,552	+		PP_0115	0.23	+0.4
120,552	+		PP_0115	0.23	-0.7
120,552	+		PP_0115	0.23	-0.9
120,552	+		PP_0115	0.23	+1.4
120,553	-		PP_0115	0.23	-1.3
120,553	-		PP_0115	0.23	+0.6
120,699	+		PP_0115	0.30	+1.0
120,700	-		PP_0115	0.30	+4.1
120,700	-		PP_0115	0.30	-0.7
120,700	-		PP_0115	0.30	+0.2
120,771	+		PP_0115	0.34	+0.7
120,771	+		PP_0115	0.34	+1.2
120,771	+		PP_0115	0.34	-0.2