Strain Fitness in Pseudomonas putida KT2440 around PP_0110

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
114,706	+				+0.2
114,707	-				-1.4
114,707	-				-2.2
114,707	-				-0.3
114,707	-				+1.5
114,707	-				+0.4
114,708	+				-1.5
114,757	+		PP_0109	0.11	+1.1
114,757	+		PP_0109	0.11	-1.1
114,868	+		PP_0109	0.22	-0.6
114,869	-		PP_0109	0.22	+0.4
114,968	+		PP_0109	0.31	-0.0
115,002	+		PP_0109	0.34	-1.0
115,002	+		PP_0109	0.34	+0.4
115,002	+		PP_0109	0.34	-0.8
115,003	-		PP_0109	0.34	+0.6
115,003	-		PP_0109	0.34	+0.4
115,065	+		PP_0109	0.40	-3.1
115,065	+		PP_0109	0.40	+3.7
115,220	-		PP_0109	0.54	-2.2
115,324	+		PP_0109	0.64	+0.2
115,594	+		PP_0109	0.89	-1.1
115,683	+				+2.5
115,683	+				-2.3
115,683	+				+0.5
115,684	-				+0.4
115,684	-				-1.7
115,684	-				-1.8
115,711	+				+1.2
115,712	-				+1.3
115,718	-				-0.2
115,718	-				-3.2
115,718	-				-2.3
115,740	+				+0.2
115,741	-				-0.2
116,075	-		PP_0110	0.42	+0.1
116,094	+		PP_0110	0.44	-0.9
116,095	-		PP_0110	0.44	-2.2
116,287	-		PP_0110	0.66	-1.2
116,348	+		PP_0110	0.73	-1.4
116,348	+		PP_0110	0.73	-1.2
116,348	+		PP_0110	0.73	+0.7
116,358	+		PP_0110	0.74	-0.4
116,359	-		PP_0110	0.74	-1.6
116,359	-		PP_0110	0.74	+0.9
116,395	-		PP_0110	0.78	-0.2
116,395	-		PP_0110	0.78	+0.2
116,438	-		PP_0110	0.83	+0.5
116,478	+		PP_0110	0.87	+2.7
116,478	+		PP_0110	0.87	-0.9
116,479	-		PP_0110	0.87	+2.4
116,479	-		PP_0110	0.87	-1.2
116,479	-		PP_0110	0.87	-1.5
116,479	-		PP_0110	0.87	-0.9
116,483	+		PP_0110	0.88	-1.1
116,484	-		PP_0110	0.88	+2.4
116,520	+				+0.5
116,521	-				-1.0
116,525	+				-0.3
116,526	-				+1.1
116,532	+				-0.4
116,532	+				-0.6
116,533	-				-0.9
116,571	+				-0.7
116,572	-				+1.4
116,572	-				-0.2
116,587	+				+1.1
116,588	-				-1.8
116,588	-				+1.4
116,588	-				+3.0
116,588	-				+0.7
116,668	+		PP_0111	0.13	-0.4
116,668	+		PP_0111	0.13	+0.2
116,668	+		PP_0111	0.13	-1.9
116,668	+		PP_0111	0.13	+0.4
116,668	+		PP_0111	0.13	-1.6
116,668	+		PP_0111	0.13	-2.4
116,828	+		PP_0111	0.38	+0.4
116,828	+		PP_0111	0.38	-1.2
116,828	+		PP_0111	0.38	-2.4
116,829	-		PP_0111	0.38	-1.2
116,829	-		PP_0111	0.38	-0.6
116,834	+		PP_0111	0.39	-1.2
116,834	+		PP_0111	0.39	-0.6
116,835	-		PP_0111	0.39	+1.4
116,835	-		PP_0111	0.39	-1.4
116,835	-		PP_0111	0.39	+1.4
116,835	-		PP_0111	0.39	-3.1
116,835	-		PP_0111	0.39	+3.0
116,835	-		PP_0111	0.39	+0.4
116,835	-		PP_0111	0.39	+0.4
116,945	-		PP_0111	0.56	-0.8
116,975	+		PP_0111	0.61	+2.0
116,975	+		PP_0111	0.61	-0.6
116,975	+		PP_0111	0.61	+0.4
116,975	+		PP_0111	0.61	+1.7
116,985	-		PP_0111	0.63	-0.6
117,093	-		PP_0111	0.80	-2.9
117,094	+		PP_0111	0.80	-0.6
117,095	-		PP_0111	0.80	-3.2
117,237	-				+0.1
117,237	-				+1.7
117,256	+				-1.2
117,256	+				+0.6
117,257	-				-0.5
117,257	-				+1.1
117,257	-				+0.8
117,295	+				+0.3
117,305	+				-0.7
117,305	+				-1.2
117,306	-				-0.8
117,343	-				+0.4
117,450	+		PP_0112	0.18	+0.7
117,451	-		PP_0112	0.18	+0.4
117,451	-		PP_0112	0.18	-3.9
117,516	+		PP_0112	0.26	+0.9
117,517	-		PP_0112	0.26	+1.7
117,517	-		PP_0112	0.26	-0.1
117,542	+		PP_0112	0.30	-0.5
117,542	+		PP_0112	0.30	-1.2
117,542	+		PP_0112	0.30	-2.3
117,543	-		PP_0112	0.30	+0.4