Strain Fitness in Pseudomonas putida KT2440 around PP_0094

Experiment: pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0093 and PP_0094 are separated by 106 nucleotidesPP_0094 and PP_0095 are separated by 121 nucleotidesPP_0095 and PP_0096 are separated by 102 nucleotides PP_0093: PP_0093 - putative zinc protease protein, at 98,575 to 99,651 _0093 PP_0094: PP_0094 - 5'-nucleotidase, at 99,758 to 100,408 _0094 PP_0095: PP_0095 - putative enzyme of unknown function, at 100,530 to 101,078 _0095 PP_0096: PP_0096 - oligopeptidase A, at 101,181 to 103,232 _0096 Position (kb) 99 100 101Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 98.851 kb on + strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.852 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.956 kb on + strand, within PP_0093at 98.966 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 99.028 kb on + strand, within PP_0093at 99.028 kb on + strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.029 kb on - strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.049 kb on + strand, within PP_0093at 99.050 kb on - strand, within PP_0093at 99.050 kb on - strand, within PP_0093at 99.120 kb on + strand, within PP_0093at 99.121 kb on - strand, within PP_0093at 99.121 kb on - strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.157 kb on + strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.158 kb on - strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.334 kb on + strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.335 kb on - strand, within PP_0093at 99.406 kb on + strand, within PP_0093at 99.448 kb on + strand, within PP_0093at 99.449 kb on - strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.463 kb on + strand, within PP_0093at 99.464 kb on + strand, within PP_0093at 99.464 kb on - strand, within PP_0093at 99.464 kb on - strand, within PP_0093at 99.478 kb on - strand, within PP_0093at 99.505 kb on + strand, within PP_0093at 99.505 kb on + strand, within PP_0093at 99.506 kb on - strand, within PP_0093at 99.571 kb on + strandat 99.709 kb on + strandat 99.709 kb on + strandat 99.709 kb on + strandat 99.769 kb on + strandat 99.769 kb on + strandat 99.769 kb on + strandat 99.770 kb on - strandat 100.014 kb on + strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.096 kb on - strandat 100.096 kb on - strand, within PP_0094at 100.096 kb on - strand, within PP_0094at 100.096 kb on - strandat 100.237 kb on - strand, within PP_0094at 100.410 kb on + strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.469 kb on + strandat 100.469 kb on + strandat 100.470 kb on - strandat 100.546 kb on + strandat 100.582 kb on + strandat 100.582 kb on + strandat 100.582 kb on + strandat 100.583 kb on - strandat 100.583 kb on - strandat 100.597 kb on + strand, within PP_0095at 100.598 kb on - strand, within PP_0095at 100.660 kb on + strand, within PP_0095at 100.660 kb on + strand, within PP_0095at 100.660 kb on + strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.667 kb on - strand, within PP_0095at 100.719 kb on + strand, within PP_0095at 100.719 kb on + strand, within PP_0095at 100.720 kb on - strand, within PP_0095at 100.720 kb on - strand, within PP_0095at 100.764 kb on - strand, within PP_0095at 100.881 kb on - strand, within PP_0095at 101.081 kb on + strandat 101.082 kb on - strandat 101.082 kb on - strandat 101.082 kb on - strandat 101.138 kb on - strandat 101.138 kb on - strandat 101.141 kb on + strandat 101.141 kb on + strandat 101.141 kb on + strandat 101.141 kb on + strandat 101.289 kb on - strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.331 kb on - strandat 101.331 kb on - strandat 101.331 kb on - strandat 101.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 4
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98,851 + PP_0093 0.26 +0.8
98,851 + PP_0093 0.26 +0.4
98,852 - PP_0093 0.26 +0.4
98,873 - PP_0093 0.28 +0.0
98,873 - PP_0093 0.28 +1.2
98,956 + PP_0093 0.35 +2.4
98,966 - PP_0093 0.36 -1.2
98,969 - PP_0093 0.37 -1.7
98,969 - PP_0093 0.37 +3.4
98,969 - PP_0093 0.37 -0.1
99,028 + PP_0093 0.42 +2.1
99,028 + PP_0093 0.42 -1.9
99,029 - PP_0093 0.42 +1.3
99,029 - PP_0093 0.42 +0.3
99,029 - PP_0093 0.42 -2.2
99,029 - PP_0093 0.42 +0.7
99,049 + PP_0093 0.44 +2.2
99,049 + PP_0093 0.44 -0.1
99,049 + PP_0093 0.44 -0.8
99,050 - PP_0093 0.44 +0.5
99,050 - PP_0093 0.44 -1.8
99,120 + PP_0093 0.51 -0.2
99,121 - PP_0093 0.51 +2.7
99,121 - PP_0093 0.51 +3.2
99,157 + PP_0093 0.54 -1.2
99,157 + PP_0093 0.54 +0.4
99,157 + PP_0093 0.54 +0.6
99,157 + PP_0093 0.54 +0.4
99,157 + PP_0093 0.54 -1.9
99,157 + PP_0093 0.54 -1.9
99,157 + PP_0093 0.54 -0.3
99,157 + PP_0093 0.54 +0.9
99,158 - PP_0093 0.54 +5.7
99,158 - PP_0093 0.54 +0.5
99,158 - PP_0093 0.54 +1.1
99,158 - PP_0093 0.54 -0.6
99,158 - PP_0093 0.54 +4.8
99,158 - PP_0093 0.54 -0.0
99,334 + PP_0093 0.70 -0.5
99,334 + PP_0093 0.70 -1.6
99,334 + PP_0093 0.70 +0.2
99,335 - PP_0093 0.71 -0.6
99,335 - PP_0093 0.71 +1.0
99,335 - PP_0093 0.71 +1.9
99,406 + PP_0093 0.77 -0.3
99,448 + PP_0093 0.81 -0.4
99,449 - PP_0093 0.81 -0.3
99,463 + PP_0093 0.82 +1.0
99,463 + PP_0093 0.82 -0.6
99,463 + PP_0093 0.82 -0.4
99,463 + PP_0093 0.82 -0.9
99,463 + PP_0093 0.82 -0.1
99,463 + PP_0093 0.82 -1.1
99,463 + PP_0093 0.82 -2.7
99,464 + PP_0093 0.83 +0.4
99,464 - PP_0093 0.83 -0.1
99,464 - PP_0093 0.83 +0.5
99,478 - PP_0093 0.84 -0.3
99,505 + PP_0093 0.86 +3.8
99,505 + PP_0093 0.86 +4.0
99,506 - PP_0093 0.86 +2.0
99,571 + +0.3
99,709 + -0.9
99,709 + +0.0
99,709 + -1.2
99,769 + +2.4
99,769 + -0.4
99,769 + -0.1
99,770 - -0.9
100,014 + PP_0094 0.39 -0.6
100,015 - PP_0094 0.39 +3.4
100,015 - PP_0094 0.39 -2.9
100,015 - PP_0094 0.39 +1.8
100,015 - PP_0094 0.39 +2.0
100,015 - PP_0094 0.39 -0.6
100,095 + PP_0094 0.52 +2.4
100,095 + PP_0094 0.52 +0.9
100,095 + PP_0094 0.52 -0.1
100,096 - +0.4
100,096 - PP_0094 0.52 +1.7
100,096 - PP_0094 0.52 -0.4
100,096 - +1.4
100,237 - PP_0094 0.74 +1.4
100,410 + -1.2
100,411 - +0.3
100,411 - -1.9
100,411 - -1.4
100,411 - +1.1
100,411 - +4.5
100,411 - -0.9
100,469 + +0.1
100,469 + +1.4
100,470 - -0.6
100,546 + -0.7
100,582 + -1.4
100,582 + +1.7
100,582 + -1.2
100,583 - +0.4
100,583 - -1.9
100,597 + PP_0095 0.12 -1.9
100,598 - PP_0095 0.12 +0.5
100,660 + PP_0095 0.24 +3.4
100,660 + PP_0095 0.24 +0.4
100,660 + PP_0095 0.24 +3.2
100,661 - PP_0095 0.24 -0.8
100,661 - PP_0095 0.24 -3.4
100,661 - PP_0095 0.24 +0.9
100,661 - PP_0095 0.24 -0.8
100,661 - PP_0095 0.24 +1.2
100,661 - PP_0095 0.24 -0.3
100,667 - PP_0095 0.25 -0.7
100,719 + PP_0095 0.34 +0.4
100,719 + PP_0095 0.34 -0.2
100,720 - PP_0095 0.35 -0.9
100,720 - PP_0095 0.35 -1.3
100,764 - PP_0095 0.43 +3.8
100,881 - PP_0095 0.64 -1.4
101,081 + -0.6
101,082 - +1.1
101,082 - +0.6
101,082 - +0.4
101,138 - -1.8
101,138 - -2.9
101,141 + -1.7
101,141 + -1.0
101,141 + +0.6
101,141 + -0.6
101,289 - -0.6
101,330 + +2.4
101,330 + -2.4
101,330 + +0.4
101,330 + +2.5
101,330 + +0.3
101,331 - +0.1
101,331 - -0.9
101,331 - +0.4
101,331 - -0.1

Or see this region's nucleotide sequence