Strain Fitness in Pseudomonas putida KT2440 around PP_0826

Experiment: carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0824 and PP_0825 overlap by 4 nucleotidesPP_0825 and PP_0826 overlap by 7 nucleotidesPP_0826 and PP_0827 overlap by 4 nucleotidesPP_0827 and PP_0828 are separated by 36 nucleotides PP_0824: PP_0824 - phosphonate transport system-binding protein, at 962,541 to 963,395 _0824 PP_0825: PP_0825 - phosphonates import ATP-binding protein, at 963,392 to 964,201 _0825 PP_0826: PP_0826 - phosphonate ABC transporter, permease protein, at 964,195 to 965,022 _0826 PP_0827: PP_0827 - putative phosphonate transport system permease protein PtxC, at 965,019 to 965,786 _0827 PP_0828: PP_0828 - conserved membrane protein of unknown function, at 965,823 to 966,716 _0828 Position (kb) 964 965 966Strain fitness (log2 ratio) -2 -1 0 1 2 3at 963.199 kb on - strand, within PP_0824at 963.290 kb on + strand, within PP_0824at 963.291 kb on - strand, within PP_0824at 963.348 kb on + strandat 963.348 kb on + strandat 963.348 kb on + strandat 963.348 kb on + strandat 963.349 kb on - strandat 963.349 kb on - strandat 963.349 kb on - strandat 963.349 kb on - strandat 963.422 kb on + strandat 963.450 kb on + strandat 963.479 kb on - strand, within PP_0825at 963.887 kb on + strand, within PP_0825at 963.887 kb on + strand, within PP_0825at 963.955 kb on + strand, within PP_0825at 963.956 kb on - strand, within PP_0825at 963.956 kb on - strand, within PP_0825at 964.023 kb on + strand, within PP_0825at 964.265 kb on + strandat 964.266 kb on - strandat 964.399 kb on + strand, within PP_0826at 964.400 kb on - strand, within PP_0826at 964.407 kb on + strand, within PP_0826at 964.587 kb on + strand, within PP_0826at 964.588 kb on - strand, within PP_0826at 964.588 kb on - strand, within PP_0826at 964.655 kb on + strand, within PP_0826at 964.656 kb on - strand, within PP_0826at 964.675 kb on + strandat 964.675 kb on + strand, within PP_0826at 964.675 kb on + strand, within PP_0826at 964.675 kb on + strand, within PP_0826at 964.676 kb on - strand, within PP_0826at 964.676 kb on - strand, within PP_0826at 964.700 kb on - strand, within PP_0826at 964.784 kb on - strand, within PP_0826at 964.822 kb on + strand, within PP_0826at 964.822 kb on + strand, within PP_0826at 964.823 kb on - strand, within PP_0826at 964.831 kb on + strand, within PP_0826at 965.085 kb on + strandat 965.580 kb on - strand, within PP_0827at 965.664 kb on + strand, within PP_0827at 965.664 kb on + strand, within PP_0827at 965.664 kb on + strand, within PP_0827at 965.717 kb on + strandat 965.717 kb on + strandat 965.896 kb on - strandat 965.900 kb on + strandat 965.900 kb on + strandat 965.900 kb on + strandat 965.901 kb on - strandat 965.901 kb on - strandat 965.901 kb on - strandat 965.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM
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963,199 - PP_0824 0.77 -0.8
963,290 + PP_0824 0.88 -0.9
963,291 - PP_0824 0.88 -1.4
963,348 + -0.4
963,348 + -1.8
963,348 + -0.0
963,348 + +0.4
963,349 - -0.6
963,349 - +0.6
963,349 - +0.3
963,349 - +0.6
963,422 + -0.4
963,450 + +2.0
963,479 - PP_0825 0.11 +1.1
963,887 + PP_0825 0.61 -0.5
963,887 + PP_0825 0.61 +0.1
963,955 + PP_0825 0.70 +0.1
963,956 - PP_0825 0.70 +1.1
963,956 - PP_0825 0.70 +2.1
964,023 + PP_0825 0.78 -0.1
964,265 + +0.4
964,266 - +2.9
964,399 + PP_0826 0.25 -1.6
964,400 - PP_0826 0.25 -0.1
964,407 + PP_0826 0.26 +1.0
964,587 + PP_0826 0.47 -1.7
964,588 - PP_0826 0.47 +0.9
964,588 - PP_0826 0.47 +0.2
964,655 + PP_0826 0.56 +0.4
964,656 - PP_0826 0.56 +0.1
964,675 + +0.4
964,675 + PP_0826 0.58 +1.2
964,675 + PP_0826 0.58 +1.4
964,675 + PP_0826 0.58 -0.7
964,676 - PP_0826 0.58 +1.1
964,676 - PP_0826 0.58 -2.1
964,700 - PP_0826 0.61 -0.3
964,784 - PP_0826 0.71 +0.6
964,822 + PP_0826 0.76 +0.1
964,822 + PP_0826 0.76 +1.4
964,823 - PP_0826 0.76 +0.9
964,831 + PP_0826 0.77 -0.7
965,085 + -1.3
965,580 - PP_0827 0.73 +3.3
965,664 + PP_0827 0.84 +0.1
965,664 + PP_0827 0.84 +0.1
965,664 + PP_0827 0.84 +1.2
965,717 + -0.7
965,717 + -0.0
965,896 - -0.2
965,900 + -0.6
965,900 + +0.1
965,900 + -2.1
965,901 - -0.2
965,901 - -1.0
965,901 - -0.1
965,901 - -2.6

Or see this region's nucleotide sequence