Strain Fitness in Pseudomonas putida KT2440 around PP_0750

Experiment: carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0748 and PP_0749 are separated by 51 nucleotidesPP_0749 and PP_0750 are separated by 44 nucleotidesPP_0750 and PP_0751 are separated by 176 nucleotides PP_0748: PP_0748 - conserved protein of unknown function, at 866,548 to 867,021 _0748 PP_0749: PP_0749 - conserved exported protein of unknown function, at 867,073 to 867,543 _0749 PP_0750: PP_0750 - conserved protein of unknown function, at 867,588 to 867,902 _0750 PP_0751: PP_0751 - malate:quinone oxidoreductase, at 868,079 to 869,587 _0751 Position (kb) 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 866.647 kb on - strand, within PP_0748at 866.695 kb on + strand, within PP_0748at 866.696 kb on - strand, within PP_0748at 866.696 kb on - strand, within PP_0748at 866.857 kb on - strand, within PP_0748at 866.857 kb on - strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strandat 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.861 kb on - strand, within PP_0748at 866.861 kb on - strand, within PP_0748at 866.861 kb on - strand, within PP_0748at 866.861 kb on - strand, within PP_0748at 866.990 kb on - strandat 867.031 kb on + strandat 867.032 kb on - strandat 867.043 kb on + strandat 867.044 kb on - strandat 867.059 kb on - strandat 867.215 kb on - strand, within PP_0749at 867.215 kb on - strand, within PP_0749at 867.227 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.383 kb on - strand, within PP_0749at 867.383 kb on - strand, within PP_0749at 867.383 kb on - strand, within PP_0749at 867.383 kb on - strand, within PP_0749at 867.431 kb on - strand, within PP_0749at 867.534 kb on + strandat 867.534 kb on + strandat 867.535 kb on - strandat 867.535 kb on - strandat 867.535 kb on - strandat 867.535 kb on - strandat 867.617 kb on + strandat 867.617 kb on + strandat 867.634 kb on + strand, within PP_0750at 867.660 kb on + strand, within PP_0750at 867.660 kb on + strandat 867.660 kb on + strand, within PP_0750at 867.661 kb on - strand, within PP_0750at 867.661 kb on - strand, within PP_0750at 867.736 kb on - strand, within PP_0750at 867.773 kb on - strand, within PP_0750at 867.773 kb on - strand, within PP_0750at 867.871 kb on - strandat 867.871 kb on - strandat 867.871 kb on - strandat 867.871 kb on - strandat 867.887 kb on + strandat 867.887 kb on + strandat 867.888 kb on - strandat 867.888 kb on - strandat 868.014 kb on + strandat 868.080 kb on + strandat 868.080 kb on + strandat 868.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM
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866,647 - PP_0748 0.21 -1.9
866,695 + PP_0748 0.31 -0.7
866,696 - PP_0748 0.31 +0.4
866,696 - PP_0748 0.31 -0.7
866,857 - PP_0748 0.65 +0.4
866,857 - PP_0748 0.65 -1.2
866,860 + PP_0748 0.66 -0.1
866,860 + PP_0748 0.66 -0.7
866,860 + PP_0748 0.66 -1.1
866,860 + +1.4
866,860 + PP_0748 0.66 -0.8
866,860 + PP_0748 0.66 -0.5
866,860 + PP_0748 0.66 +3.2
866,860 + PP_0748 0.66 -1.2
866,860 + PP_0748 0.66 -1.3
866,860 + PP_0748 0.66 -0.5
866,861 - PP_0748 0.66 -1.0
866,861 - PP_0748 0.66 -1.4
866,861 - PP_0748 0.66 +0.4
866,861 - PP_0748 0.66 -0.0
866,990 - +0.1
867,031 + -0.1
867,032 - -0.1
867,043 + +2.0
867,044 - -2.8
867,059 - +1.0
867,215 - PP_0749 0.30 +1.1
867,215 - PP_0749 0.30 -2.9
867,227 + PP_0749 0.33 -0.9
867,382 + PP_0749 0.66 +2.0
867,382 + PP_0749 0.66 -0.3
867,382 + PP_0749 0.66 +0.1
867,382 + PP_0749 0.66 +0.6
867,382 + PP_0749 0.66 -0.7
867,383 - PP_0749 0.66 +1.0
867,383 - PP_0749 0.66 -2.6
867,383 - PP_0749 0.66 +0.4
867,383 - PP_0749 0.66 +0.1
867,431 - PP_0749 0.76 -2.0
867,534 + -0.6
867,534 + +0.3
867,535 - +3.7
867,535 - +2.4
867,535 - -1.1
867,535 - -1.0
867,617 + +0.4
867,617 + +1.4
867,634 + PP_0750 0.15 +1.1
867,660 + PP_0750 0.23 +0.6
867,660 + +0.4
867,660 + PP_0750 0.23 -2.6
867,661 - PP_0750 0.23 -1.6
867,661 - PP_0750 0.23 +0.3
867,736 - PP_0750 0.47 +2.6
867,773 - PP_0750 0.59 +1.3
867,773 - PP_0750 0.59 +1.8
867,871 - +1.1
867,871 - -1.4
867,871 - +0.4
867,871 - +3.4
867,887 + -0.6
867,887 + +0.3
867,888 - -0.6
867,888 - +1.7
868,014 + +0.6
868,080 + -1.4
868,080 + +0.3
868,087 - -0.9

Or see this region's nucleotide sequence