Strain Fitness in Agrobacterium fabrum C58 around Atu8180

Experiment: Acetovanillone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetovanillone 5 mM
2,555,369	+		Atu2580	0.47	+0.4
2,555,369	+		Atu2580	0.47	+0.3
2,555,377	-		Atu2580	0.47	-0.2
2,555,505	-		Atu2580	0.55	-0.9
2,555,505	-		Atu2580	0.55	+0.2
2,555,596	-		Atu2580	0.60	-0.2
2,555,607	-		Atu2580	0.61	+0.1
2,555,618	+		Atu2580	0.61	+0.7
2,555,742	+		Atu2580	0.69	+0.5
2,555,757	+		Atu2580	0.70	-0.4
2,555,776	+		Atu2580	0.71	+0.1
2,555,820	+		Atu2580	0.73	-1.7
2,555,820	+		Atu2580	0.73	+1.6
2,555,867	+		Atu2580	0.76	+0.1
2,555,898	-		Atu2580	0.78	-0.6
2,556,153	+				+0.8
2,556,161	-				-0.2
2,556,163	+				+0.2
2,556,168	+				+0.1
2,556,171	-				+2.2
2,556,171	-				-0.5
2,556,171	-				+0.4
2,556,227	+				-0.2
2,556,245	-				+0.2
2,556,455	+		Atu8180	0.30	-0.5
2,556,548	-		Atu8180	0.50	+0.2
2,556,600	+		Atu8180	0.60	-1.2
2,556,608	-		Atu8180	0.62	+0.1
2,556,608	-		Atu8180	0.62	-0.9
2,556,711	-		Atu8180	0.83	-0.0
2,556,720	-		Atu8180	0.85	-0.4
2,556,734	+		Atu8180	0.88	-0.2
2,556,734	+		Atu8180	0.88	-0.2
2,556,741	+		Atu8180	0.90	-2.1
2,556,741	-		Atu8180	0.90	-0.4
2,556,749	-				-0.2
2,556,784	-				-1.5
2,556,898	-				-0.9
2,556,959	-		Atu2582	0.13	-1.0
2,557,030	-		Atu2582	0.18	-0.4
2,557,154	-		Atu2582	0.28	+0.3
2,557,319	+		Atu2582	0.41	-1.0
2,557,363	-		Atu2582	0.45	+0.3
2,557,422	-		Atu2582	0.49	-0.2
2,557,573	+		Atu2582	0.61	-0.3
2,557,678	-		Atu2582	0.69	-0.2
2,557,680	+		Atu2582	0.69	-1.2
2,557,682	+		Atu2582	0.70	-1.6
2,557,698	-		Atu2582	0.71	-0.7
2,557,725	-		Atu2582	0.73	-1.4
2,557,758	-		Atu2582	0.76	-0.3
2,557,760	+		Atu2582	0.76	+0.2
2,557,760	+		Atu2582	0.76	-0.5