Strain Fitness in Agrobacterium fabrum C58 around Atu8162

Experiment: Acetovanillone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetovanillone 5 mM
1,657,143	-				-0.3
1,657,157	+				-2.1
1,657,160	-				-0.0
1,657,358	-		Atu8112	0.22	+1.0
1,657,361	+		Atu8112	0.22	+0.2
1,657,389	-		Atu8112	0.26	+0.3
1,657,395	+		Atu8112	0.26	-0.1
1,657,403	-		Atu8112	0.27	-0.1
1,657,587	+		Atu8112	0.49	+0.0
1,657,587	+		Atu8112	0.49	-0.1
1,657,882	+		Atu8112	0.83	+0.1
1,657,887	+		Atu8112	0.84	+0.3
1,657,890	-		Atu8112	0.84	+0.1
1,657,890	-		Atu8112	0.84	-0.3
1,658,066	-				+0.5
1,658,103	-				-1.6
1,658,174	+		Atu8162	0.16	+1.4
1,658,214	-		Atu8162	0.31	+0.3
1,658,446	+				-0.1
1,658,478	+				+0.5
1,658,503	+				-0.2
1,658,534	-				-0.1
1,658,540	-				-0.3
1,658,649	+		Atu1672	0.17	-0.6
1,658,657	-		Atu1672	0.17	+0.6
1,658,657	-		Atu1672	0.17	+0.5
1,658,657	-		Atu1672	0.17	-0.1
1,658,724	-		Atu1672	0.22	-0.3
1,658,731	-		Atu1672	0.22	-0.8
1,658,761	+		Atu1672	0.24	+0.4
1,658,816	+		Atu1672	0.28	-0.2
1,658,893	-		Atu1672	0.33	-1.3
1,658,916	-		Atu1672	0.34	-0.1
1,658,916	-		Atu1672	0.34	+0.0
1,658,929	+		Atu1672	0.35	+0.7
1,658,982	-		Atu1672	0.38	+0.7
1,658,998	+		Atu1672	0.40	+0.5
1,659,006	-		Atu1672	0.40	-0.3
1,659,041	+		Atu1672	0.42	-0.9
1,659,104	-		Atu1672	0.46	+0.1
1,659,136	+		Atu1672	0.49	-0.1
1,659,136	+		Atu1672	0.49	+0.5
1,659,144	-		Atu1672	0.49	+0.2
1,659,144	-		Atu1672	0.49	+0.1
1,659,172	+		Atu1672	0.51	+0.8
1,659,268	-		Atu1672	0.57	-0.2
1,659,285	+		Atu1672	0.58	+0.0
1,659,302	-		Atu1672	0.59	+0.1
1,659,318	+		Atu1672	0.60	-0.2
1,659,326	-		Atu1672	0.61	-0.9