Strain Fitness in Agrobacterium fabrum C58 around Atu6098

Experiment: Acetovanillone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6096 and Atu6097 overlap by 40 nucleotidesAtu6097 and Atu6098 overlap by 4 nucleotidesAtu6098 and Atu6099 are separated by 380 nucleotidesAtu6099 and Atu6100 are separated by 11 nucleotides Atu6096: Atu6096 - conserved hypothetical protein, at 116,838 to 117,917 Atu6096 Atu6097: Atu6097 - cell filamentation protein, at 117,878 to 118,474 Atu6097 Atu6098: Atu6098 - transcriptional regulator, HTH family, at 118,471 to 118,932 Atu6098 Atu6099: Atu6099 - conserved hypothetical protein, at 119,313 to 119,915 Atu6099 Atu6100: Atu6100 - conserved hypothetical protein, at 119,927 to 120,328 Atu6100 Position (kb) 118 119Strain fitness (log2 ratio) -1 0 1 2at 117.487 kb on - strand, within Atu6096at 117.505 kb on + strand, within Atu6096at 117.510 kb on + strand, within Atu6096at 117.513 kb on - strand, within Atu6096at 117.520 kb on + strand, within Atu6096at 117.794 kb on + strand, within Atu6096at 117.794 kb on + strand, within Atu6096at 117.869 kb on + strandat 117.869 kb on + strandat 117.874 kb on + strandat 117.877 kb on - strandat 117.877 kb on - strandat 117.911 kb on + strandat 117.937 kb on - strandat 117.956 kb on + strand, within Atu6097at 117.979 kb on - strand, within Atu6097at 118.000 kb on - strand, within Atu6097at 118.039 kb on + strand, within Atu6097at 118.127 kb on + strand, within Atu6097at 118.127 kb on + strand, within Atu6097at 118.128 kb on + strand, within Atu6097at 118.135 kb on - strand, within Atu6097at 118.135 kb on - strand, within Atu6097at 118.214 kb on - strand, within Atu6097at 118.250 kb on - strand, within Atu6097at 118.294 kb on - strand, within Atu6097at 118.297 kb on + strand, within Atu6097at 118.331 kb on + strand, within Atu6097at 118.400 kb on + strand, within Atu6097at 118.411 kb on + strand, within Atu6097at 118.423 kb on + strandat 118.423 kb on + strandat 118.423 kb on + strandat 118.428 kb on + strandat 118.431 kb on - strandat 118.431 kb on - strandat 118.431 kb on - strandat 118.431 kb on - strandat 118.436 kb on - strandat 118.438 kb on + strandat 118.446 kb on - strandat 118.446 kb on - strandat 118.513 kb on + strandat 118.513 kb on + strandat 118.858 kb on - strand, within Atu6098at 118.947 kb on - strandat 119.092 kb on + strandat 119.167 kb on + strandat 119.167 kb on + strandat 119.175 kb on - strandat 119.191 kb on + strandat 119.248 kb on - strandat 119.295 kb on + strandat 119.397 kb on + strand, within Atu6099at 119.397 kb on + strand, within Atu6099at 119.405 kb on - strand, within Atu6099at 119.455 kb on - strand, within Atu6099at 119.642 kb on + strand, within Atu6099at 119.706 kb on - strand, within Atu6099at 119.722 kb on - strand, within Atu6099at 119.736 kb on - strand, within Atu6099at 119.736 kb on - strand, within Atu6099at 119.736 kb on - strand, within Atu6099at 119.798 kb on + strand, within Atu6099at 119.801 kb on - strand, within Atu6099at 119.806 kb on - strand, within Atu6099at 119.806 kb on - strand, within Atu6099at 119.811 kb on + strand, within Atu6099at 119.819 kb on - strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.824 kb on + strand, within Atu6099at 119.832 kb on - strand, within Atu6099at 119.832 kb on - strand, within Atu6099at 119.832 kb on - strand, within Atu6099at 119.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetovanillone 5 mM
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117,487 - Atu6096 0.60 +0.2
117,505 + Atu6096 0.62 -0.1
117,510 + Atu6096 0.62 -0.3
117,513 - Atu6096 0.62 +0.1
117,520 + Atu6096 0.63 -0.2
117,794 + Atu6096 0.89 -0.0
117,794 + Atu6096 0.89 +1.9
117,869 + +0.8
117,869 + +0.3
117,874 + -0.5
117,877 - +0.1
117,877 - -0.0
117,911 + -0.1
117,937 - +0.0
117,956 + Atu6097 0.13 -0.4
117,979 - Atu6097 0.17 +0.8
118,000 - Atu6097 0.20 +0.1
118,039 + Atu6097 0.27 -0.1
118,127 + Atu6097 0.42 +0.1
118,127 + Atu6097 0.42 -0.1
118,128 + Atu6097 0.42 +0.0
118,135 - Atu6097 0.43 -0.2
118,135 - Atu6097 0.43 +0.8
118,214 - Atu6097 0.56 -0.1
118,250 - Atu6097 0.62 +0.6
118,294 - Atu6097 0.70 -0.3
118,297 + Atu6097 0.70 +0.4
118,331 + Atu6097 0.76 +0.7
118,400 + Atu6097 0.87 +0.4
118,411 + Atu6097 0.89 +0.2
118,423 + +1.4
118,423 + -0.1
118,423 + +0.4
118,428 + +0.1
118,431 - -0.1
118,431 - +0.6
118,431 - +0.7
118,431 - +0.2
118,436 - +0.2
118,438 + +0.4
118,446 - -0.5
118,446 - -0.4
118,513 + +0.0
118,513 + -0.4
118,858 - Atu6098 0.84 -0.7
118,947 - -1.0
119,092 + -1.2
119,167 + +0.8
119,167 + +0.1
119,175 - -0.3
119,191 + +0.1
119,248 - +0.2
119,295 + +1.4
119,397 + Atu6099 0.14 +0.6
119,397 + Atu6099 0.14 -0.1
119,405 - Atu6099 0.15 +0.2
119,455 - Atu6099 0.24 -0.2
119,642 + Atu6099 0.55 -0.3
119,706 - Atu6099 0.65 -0.1
119,722 - Atu6099 0.68 +0.6
119,736 - Atu6099 0.70 +0.3
119,736 - Atu6099 0.70 -0.7
119,736 - Atu6099 0.70 +1.2
119,798 + Atu6099 0.80 +0.1
119,801 - Atu6099 0.81 -0.1
119,806 - Atu6099 0.82 -0.3
119,806 - Atu6099 0.82 +0.7
119,811 + Atu6099 0.83 +0.4
119,819 - Atu6099 0.84 +1.6
119,824 + Atu6099 0.85 -0.4
119,824 + Atu6099 0.85 +0.7
119,824 + Atu6099 0.85 +0.3
119,824 + Atu6099 0.85 -0.3
119,824 + Atu6099 0.85 -0.1
119,832 - Atu6099 0.86 +1.9
119,832 - Atu6099 0.86 +0.2
119,832 - Atu6099 0.86 -1.1
119,871 - -1.1

Or see this region's nucleotide sequence