Strain Fitness in Agrobacterium fabrum C58 around Atu4078

Experiment: Acetovanillone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetovanillone 5 mM
1,196,860	+		Atu4077	0.55	-1.0
1,196,928	-		Atu4077	0.58	-1.2
1,196,930	-		Atu4077	0.58	-0.8
1,196,978	+		Atu4077	0.60	-3.1
1,196,978	+		Atu4077	0.60	-1.2
1,196,978	+		Atu4077	0.60	-0.7
1,196,980	-		Atu4077	0.60	-0.9
1,196,981	-		Atu4077	0.60	-1.0
1,196,986	-		Atu4077	0.61	-1.1
1,197,010	-		Atu4077	0.62	-1.0
1,197,055	+		Atu4077	0.64	-2.0
1,197,131	+		Atu4077	0.67	-0.5
1,197,213	-		Atu4077	0.71	-2.6
1,197,329	+		Atu4077	0.76	-0.6
1,197,413	+		Atu4077	0.80	-0.6
1,197,413	+		Atu4077	0.80	-1.8
1,197,443	-		Atu4077	0.81	-2.1
1,197,520	-		Atu4077	0.85	-0.3
1,197,586	-		Atu4077	0.88	-1.2
1,197,651	-				-0.8
1,197,651	-				-1.1
1,197,914	+				+0.1
1,197,988	-				+1.6
1,198,037	+				+0.3
1,198,047	-				-1.4
1,198,114	-		Atu4078	0.10	-0.1
1,198,139	-		Atu4078	0.11	+1.1
1,198,385	+		Atu4078	0.21	-1.3
1,198,493	+		Atu4078	0.26	-0.2
1,198,552	-		Atu4078	0.28	-0.4
1,198,687	-		Atu4078	0.34	-0.1
1,198,697	-		Atu4078	0.34	-0.5
1,198,697	-		Atu4078	0.34	-1.4
1,198,789	-		Atu4078	0.38	-1.7
1,198,826	+		Atu4078	0.39	+0.2
1,198,831	+		Atu4078	0.40	+0.0
1,198,843	-		Atu4078	0.40	-2.3
1,198,853	-		Atu4078	0.40	+0.0
1,198,858	-		Atu4078	0.41	-0.0
1,198,878	+		Atu4078	0.41	-0.8
1,198,878	+		Atu4078	0.41	+0.0
1,198,880	+		Atu4078	0.42	-0.6
1,198,916	-		Atu4078	0.43	-0.6
1,198,916	-		Atu4078	0.43	-0.3
1,198,919	+		Atu4078	0.43	-0.0
1,198,924	+		Atu4078	0.43	-0.4
1,198,951	+		Atu4078	0.44	-0.2
1,198,990	+		Atu4078	0.46	-0.1
1,199,197	+		Atu4078	0.54	-0.3
1,199,235	+		Atu4078	0.56	-1.5
1,199,276	+		Atu4078	0.58	-1.2
1,199,284	-		Atu4078	0.58	-0.9
1,199,284	-		Atu4078	0.58	-0.4
1,199,331	+		Atu4078	0.60	-0.7
1,199,332	-		Atu4078	0.60	-0.3
1,199,336	+		Atu4078	0.60	-0.4
1,199,357	+		Atu4078	0.61	-1.0
1,199,364	+		Atu4078	0.61	-0.2
1,199,428	+		Atu4078	0.64	-1.0
1,199,482	-		Atu4078	0.66	-0.4
1,199,485	-		Atu4078	0.66	+0.0
1,199,541	+		Atu4078	0.68	-1.1
1,199,567	+		Atu4078	0.69	-0.0
1,199,582	+		Atu4078	0.70	-0.8
1,199,605	-		Atu4078	0.71	-0.3
1,199,635	+		Atu4078	0.72	+0.8
1,199,635	+		Atu4078	0.72	-1.1
1,199,696	-		Atu4078	0.75	+0.1
1,199,754	+		Atu4078	0.77	-0.4
1,199,952	+		Atu4078	0.85	-0.3
1,199,960	-		Atu4078	0.85	-0.3
1,200,000	-		Atu4078	0.87	-0.5
1,200,205	-				-0.1
1,200,205	-				-0.0
1,200,248	+				+2.9
1,200,266	+				+0.1
1,200,284	-				+0.2
1,200,325	+				-0.2
1,200,349	+				-0.2
1,200,349	+				-0.7
1,200,373	+				-0.4
1,200,400	+				+0.2
1,200,612	+		Atu4079	0.58	-0.2
1,200,620	-		Atu4079	0.61	-1.1
1,200,640	-		Atu4079	0.68	-0.0
1,200,653	+		Atu4079	0.72	+0.2
1,200,692	-		Atu4079	0.87	-0.3
1,200,791	+				-0.1
1,200,791	+				-0.1
1,200,858	+				-0.3
1,200,860	+				-0.2
1,200,885	+		Atu4080	0.11	+0.0
1,200,928	+		Atu4080	0.16	+0.1
1,200,944	+		Atu4080	0.18	+0.1
1,200,976	+		Atu4080	0.22	-0.1
1,201,012	-		Atu4080	0.27	-0.1
1,201,012	-		Atu4080	0.27	-0.3
1,201,030	-		Atu4080	0.29	-0.4
1,201,043	+		Atu4080	0.31	-0.6
1,201,178	-		Atu4080	0.49	+1.6
1,201,186	+		Atu4080	0.50	+0.9
1,201,252	+		Atu4080	0.58	+0.4
1,201,260	-		Atu4080	0.59	-0.1
1,201,315	+		Atu4080	0.66	+0.1