Experiment: Acetovanillone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3308 and Atu3309 overlap by 4 nucleotides Atu3309 and Atu8187 are separated by 94 nucleotides
Atu3308: Atu3308 - celB protein, at 335,771 to 338,254
Atu3308
Atu3309: Atu3309 - cellulose synthase, at 338,251 to 340,440
Atu3309
Atu8187: Atu8187 - hypothetical protein, at 340,535 to 341,434
Atu8187
Position (kb) 338
339
340
341 Strain fitness (log2 ratio) -1
0
1
2 at 337.257 kb on + strand, within Atu3308 at 337.308 kb on - strand, within Atu3308 at 337.471 kb on + strand, within Atu3308 at 337.581 kb on - strand, within Atu3308 at 337.602 kb on + strand, within Atu3308 at 337.704 kb on - strand, within Atu3308 at 337.709 kb on - strand, within Atu3308 at 337.733 kb on + strand, within Atu3308 at 337.788 kb on - strand, within Atu3308 at 337.879 kb on + strand, within Atu3308 at 337.894 kb on + strand, within Atu3308 at 337.897 kb on - strand, within Atu3308 at 337.902 kb on - strand, within Atu3308 at 337.948 kb on + strand, within Atu3308 at 338.059 kb on + strand at 338.080 kb on - strand at 338.180 kb on - strand at 338.210 kb on + strand at 338.210 kb on + strand at 338.218 kb on - strand at 338.218 kb on - strand at 338.239 kb on - strand at 338.239 kb on - strand at 338.262 kb on - strand at 338.330 kb on + strand at 338.353 kb on + strand at 338.434 kb on + strand at 338.567 kb on + strand, within Atu3309 at 338.705 kb on - strand, within Atu3309 at 338.738 kb on + strand, within Atu3309 at 338.807 kb on + strand, within Atu3309 at 338.944 kb on + strand, within Atu3309 at 338.993 kb on - strand, within Atu3309 at 339.018 kb on + strand, within Atu3309 at 339.018 kb on + strand, within Atu3309 at 339.030 kb on + strand, within Atu3309 at 339.108 kb on + strand, within Atu3309 at 339.109 kb on + strand, within Atu3309 at 339.117 kb on - strand, within Atu3309 at 339.117 kb on - strand, within Atu3309 at 339.127 kb on - strand, within Atu3309 at 339.188 kb on + strand, within Atu3309 at 339.204 kb on - strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.224 kb on + strand, within Atu3309 at 339.232 kb on - strand, within Atu3309 at 339.232 kb on - strand, within Atu3309 at 339.245 kb on + strand, within Atu3309 at 339.315 kb on - strand, within Atu3309 at 339.345 kb on - strand, within Atu3309 at 339.399 kb on + strand, within Atu3309 at 339.399 kb on - strand, within Atu3309 at 339.423 kb on + strand, within Atu3309 at 339.457 kb on + strand, within Atu3309 at 339.484 kb on + strand, within Atu3309 at 339.561 kb on + strand, within Atu3309 at 339.561 kb on + strand, within Atu3309 at 339.569 kb on - strand, within Atu3309 at 339.608 kb on - strand, within Atu3309 at 339.638 kb on - strand, within Atu3309 at 339.956 kb on + strand, within Atu3309 at 339.979 kb on - strand, within Atu3309 at 340.022 kb on - strand, within Atu3309 at 340.053 kb on - strand, within Atu3309 at 340.137 kb on + strand, within Atu3309 at 340.160 kb on + strand, within Atu3309 at 340.235 kb on + strand at 340.243 kb on - strand at 340.243 kb on - strand at 340.306 kb on + strand at 340.331 kb on - strand at 340.331 kb on - strand at 340.538 kb on + strand at 340.630 kb on + strand, within Atu8187 at 340.637 kb on + strand, within Atu8187 at 340.708 kb on - strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.851 kb on + strand, within Atu8187 at 340.859 kb on - strand, within Atu8187 at 340.905 kb on + strand, within Atu8187 at 340.920 kb on - strand, within Atu8187 at 341.302 kb on + strand, within Atu8187
Per-strain Table
Position Strand Gene LocusTag Fraction Acetovanillone 5 mM remove 337,257 + Atu3308 0.60 +0.7 337,308 - Atu3308 0.62 -0.3 337,471 + Atu3308 0.68 +0.3 337,581 - Atu3308 0.73 +0.7 337,602 + Atu3308 0.74 +0.3 337,704 - Atu3308 0.78 -0.1 337,709 - Atu3308 0.78 +0.6 337,733 + Atu3308 0.79 +0.4 337,788 - Atu3308 0.81 +2.0 337,879 + Atu3308 0.85 +0.2 337,894 + Atu3308 0.85 +0.2 337,897 - Atu3308 0.86 +0.6 337,902 - Atu3308 0.86 +0.7 337,948 + Atu3308 0.88 -0.4 338,059 + +1.0 338,080 - +0.9 338,180 - +1.2 338,210 + +0.1 338,210 + +0.1 338,218 - -0.4 338,218 - +1.0 338,239 - +0.2 338,239 - +1.2 338,262 - +1.1 338,330 + +0.1 338,353 + +0.2 338,434 + +0.2 338,567 + Atu3309 0.14 +0.8 338,705 - Atu3309 0.21 +0.9 338,738 + Atu3309 0.22 -0.2 338,807 + Atu3309 0.25 +0.2 338,944 + Atu3309 0.32 +0.4 338,993 - Atu3309 0.34 +0.9 339,018 + Atu3309 0.35 +0.4 339,018 + Atu3309 0.35 -0.5 339,030 + Atu3309 0.36 -0.0 339,108 + Atu3309 0.39 +0.6 339,109 + Atu3309 0.39 -0.0 339,117 - Atu3309 0.40 +1.2 339,117 - Atu3309 0.40 +0.6 339,127 - Atu3309 0.40 +0.3 339,188 + Atu3309 0.43 +0.3 339,204 - Atu3309 0.44 +0.1 339,224 + Atu3309 0.44 +0.8 339,224 + Atu3309 0.44 -0.0 339,224 + Atu3309 0.44 -0.1 339,232 - Atu3309 0.45 -0.8 339,232 - Atu3309 0.45 +0.4 339,245 + Atu3309 0.45 -0.8 339,315 - Atu3309 0.49 -0.7 339,345 - Atu3309 0.50 +0.1 339,399 + Atu3309 0.52 +0.8 339,399 - Atu3309 0.52 +0.1 339,423 + Atu3309 0.54 +0.2 339,457 + Atu3309 0.55 +1.1 339,484 + Atu3309 0.56 +0.7 339,561 + Atu3309 0.60 +0.7 339,561 + Atu3309 0.60 +0.3 339,569 - Atu3309 0.60 +0.3 339,608 - Atu3309 0.62 +1.1 339,638 - Atu3309 0.63 +0.0 339,956 + Atu3309 0.78 +0.5 339,979 - Atu3309 0.79 -0.2 340,022 - Atu3309 0.81 +0.2 340,053 - Atu3309 0.82 +0.3 340,137 + Atu3309 0.86 +0.5 340,160 + Atu3309 0.87 +0.5 340,235 + +0.2 340,243 - -0.5 340,243 - -0.5 340,306 + +0.6 340,331 - +0.4 340,331 - +0.3 340,538 + +0.7 340,630 + Atu8187 0.11 -0.9 340,637 + Atu8187 0.11 -0.2 340,708 - Atu8187 0.19 +0.1 340,743 + Atu8187 0.23 +0.5 340,743 + Atu8187 0.23 +0.0 340,743 + Atu8187 0.23 -0.6 340,851 + Atu8187 0.35 +0.5 340,859 - Atu8187 0.36 +0.7 340,905 + Atu8187 0.41 +0.1 340,920 - Atu8187 0.43 -1.1 341,302 + Atu8187 0.85 +0.5
Or see this region's nucleotide sequence