Strain Fitness in Agrobacterium fabrum C58 around Atu2038

Experiment: Acetovanillone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetovanillone 5 mM
1,995,205	+		Atu2036	0.67	+0.3
1,995,254	+		Atu2036	0.70	+0.1
1,995,373	+		Atu2036	0.76	+0.8
1,995,382	+		Atu2036	0.77	-0.5
1,995,397	+		Atu2036	0.77	-0.1
1,995,397	+		Atu2036	0.77	+0.3
1,995,405	-		Atu2036	0.78	+0.8
1,995,405	-		Atu2036	0.78	+0.7
1,995,405	-		Atu2036	0.78	-0.2
1,995,405	-		Atu2036	0.78	+0.6
1,995,448	-		Atu2036	0.80	-0.4
1,995,504	-		Atu2036	0.83	+0.1
1,995,588	+		Atu2036	0.88	-0.3
1,995,594	+		Atu2036	0.88	+0.2
1,995,596	-		Atu2036	0.89	-0.2
1,995,596	-		Atu2036	0.89	+0.8
1,995,596	-		Atu2036	0.89	-0.1
1,995,602	-		Atu2036	0.89	-0.1
1,995,631	+				-0.2
1,995,728	+				-0.1
1,995,768	-				+1.1
1,995,782	-				-0.2
1,995,794	-				+0.2
1,995,794	-				-0.0
1,995,815	-				-0.8
1,995,871	+				+0.5
1,995,884	+				+0.5
1,995,992	-				+0.2
1,996,131	+				-0.8
1,996,139	-				+0.9
1,996,142	+				+0.1
1,996,150	-				+0.5
1,996,241	-				-0.2
1,996,265	-				-0.4
1,996,281	+				-0.6
1,996,314	+				-1.1
1,996,344	+				-1.6
1,996,344	+				-0.4
1,996,368	-				-0.7
1,996,404	+		Atu2038	0.11	-0.8
1,996,491	+		Atu2038	0.15	-0.4
1,996,549	-		Atu2038	0.18	-0.6
1,996,632	-		Atu2038	0.22	-2.3
1,996,722	+		Atu2038	0.27	-0.5
1,996,731	-		Atu2038	0.27	-0.7
1,996,731	-		Atu2038	0.27	-0.6
1,996,752	+		Atu2038	0.28	-0.6
1,996,780	-		Atu2038	0.30	-0.5
1,996,780	-		Atu2038	0.30	-0.8
1,996,872	+		Atu2038	0.34	-0.0
1,997,018	-		Atu2038	0.42	-0.7
1,997,051	-		Atu2038	0.43	-0.5
1,997,074	+		Atu2038	0.44	-0.5
1,997,113	-		Atu2038	0.46	-0.8
1,997,322	+		Atu2038	0.57	+0.2
1,997,323	-		Atu2038	0.57	+0.2
1,997,331	+		Atu2038	0.57	-0.7
1,997,384	+		Atu2038	0.60	+1.0
1,997,458	-		Atu2038	0.64	-0.5
1,997,464	+		Atu2038	0.64	-0.6
1,997,509	+		Atu2038	0.66	-1.1
1,997,531	+		Atu2038	0.67	-0.3
1,997,531	+		Atu2038	0.67	-0.7
1,997,535	+		Atu2038	0.67	-0.5
1,997,588	-		Atu2038	0.70	-1.1
1,997,803	+		Atu2038	0.81	-0.6
1,997,813	+		Atu2038	0.81	+0.1
1,997,894	+		Atu2038	0.85	-1.3
1,997,894	+		Atu2038	0.85	-0.4
1,998,013	-				-1.2
1,998,032	-				-1.3
1,998,102	+				-0.6
1,998,192	-				+0.8
1,998,192	-				-0.2
1,998,193	-				-0.0
1,998,474	-		Atu2039	0.31	+1.3