Strain Fitness in Agrobacterium fabrum C58 around Atu1238

Experiment: Acetovanillone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetovanillone 5 mM
1,226,273	+		Atu1237	0.15	-0.6
1,226,352	+		Atu1237	0.22	+0.5
1,226,360	-		Atu1237	0.23	+0.7
1,226,379	+		Atu1237	0.24	+0.9
1,226,389	+		Atu1237	0.25	+0.6
1,226,413	+		Atu1237	0.27	+0.6
1,226,421	-		Atu1237	0.28	+1.1
1,226,492	+		Atu1237	0.34	+0.4
1,226,499	-		Atu1237	0.35	+1.3
1,226,589	-		Atu1237	0.42	+0.4
1,226,665	+		Atu1237	0.49	+1.4
1,226,665	-		Atu1237	0.49	+0.5
1,226,667	+		Atu1237	0.49	+0.9
1,226,830	+		Atu1237	0.63	+0.8
1,226,847	+		Atu1237	0.64	+0.4
1,226,855	-		Atu1237	0.65	+0.6
1,226,855	-		Atu1237	0.65	-0.2
1,226,860	-		Atu1237	0.65	+0.7
1,226,865	-		Atu1237	0.66	+0.3
1,226,892	-		Atu1237	0.68	+0.7
1,226,981	-		Atu1237	0.75	+0.8
1,227,037	-		Atu1237	0.80	+0.0
1,227,039	+		Atu1237	0.80	+0.5
1,227,052	+		Atu1237	0.81	+0.3
1,227,059	-		Atu1237	0.82	-1.3
1,227,226	-				+0.7
1,227,233	+				+0.7
1,227,241	-				+0.2
1,227,283	-				+0.4
1,227,319	+		Atu1238	0.12	+0.7
1,227,415	+		Atu1238	0.29	+0.1
1,227,415	+		Atu1238	0.29	+0.1
1,227,415	+		Atu1238	0.29	+0.8
1,227,465	+		Atu1238	0.38	+0.6
1,227,511	-		Atu1238	0.46	+0.0
1,227,533	+		Atu1238	0.50	+0.6
1,227,558	-		Atu1238	0.54	+0.4
1,227,637	+		Atu1238	0.68	+1.3
1,227,645	-		Atu1238	0.69	+0.3
1,227,646	+		Atu1238	0.69	+0.5
1,227,646	+		Atu1238	0.69	+0.8
1,227,677	+		Atu1238	0.75	+0.4
1,227,719	+		Atu1238	0.82	-0.1
1,227,727	-		Atu1238	0.83	+0.5
1,227,742	-		Atu1238	0.86	+0.3
1,227,759	+		Atu1238	0.89	+2.0
1,227,869	+				+0.8
1,227,962	+				-0.2
1,227,962	+				+0.7
1,227,970	-				+0.2
1,228,059	+				+0.7
1,228,073	-				+0.9
1,228,073	-				+0.2
1,228,225	+				+1.0
1,228,242	-				+0.6
1,228,322	+		Atu1239	0.13	+0.3
1,228,350	-		Atu1239	0.14	+0.5
1,228,387	+		Atu1239	0.16	-0.1
1,228,493	-		Atu1239	0.20	-0.5
1,228,550	-		Atu1239	0.23	-0.3
1,228,583	+		Atu1239	0.24	+1.3
1,228,591	-		Atu1239	0.25	-0.1
1,228,591	-		Atu1239	0.25	+0.5
1,228,591	-		Atu1239	0.25	+0.8
1,228,593	+		Atu1239	0.25	+1.7
1,228,606	-		Atu1239	0.25	+0.6
1,228,606	-		Atu1239	0.25	-0.4
1,228,669	+		Atu1239	0.28	+0.6
1,228,684	-		Atu1239	0.29	+0.8
1,228,717	+		Atu1239	0.30	+0.4
1,228,735	-		Atu1239	0.31	+1.8
1,228,737	+		Atu1239	0.31	+0.4
1,228,737	+		Atu1239	0.31	+1.4
1,228,756	+		Atu1239	0.32	+0.9
1,228,767	-		Atu1239	0.32	+0.2