Strain Fitness in Agrobacterium fabrum C58 around Atu0924
Experiment: Acetovanillone 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Acetovanillone 5 mM |
---|---|---|---|---|---|
remove | |||||
912,499 | - | Atu0923 | 0.59 | -0.4 | |
912,582 | + | Atu0923 | 0.68 | -1.4 | |
912,588 | - | Atu0923 | 0.69 | -1.4 | |
912,651 | + | Atu0923 | 0.75 | -1.7 | |
912,761 | + | Atu0923 | 0.87 | -1.6 | |
912,876 | - | -2.8 | |||
912,885 | - | -1.4 | |||
912,946 | - | -1.0 | |||
912,949 | - | -0.1 | |||
913,213 | + | +0.6 | |||
913,332 | + | -0.4 | |||
913,340 | - | +0.3 | |||
913,344 | + | +0.1 | |||
913,344 | + | -0.5 | |||
913,381 | - | +1.0 | |||
913,381 | - | -0.1 | |||
913,432 | - | -0.0 | |||
913,528 | + | Atu0924 | 0.50 | +0.3 | |
913,528 | - | Atu0924 | 0.50 | +0.1 | |
913,596 | - | Atu0924 | 0.85 | +1.5 | |
913,610 | + | -0.1 | |||
913,656 | + | -0.3 | |||
913,775 | + | Atu0925 | 0.24 | -1.8 | |
913,785 | + | Atu0925 | 0.26 | -0.7 | |
913,865 | - | Atu0925 | 0.40 | +0.2 | |
913,900 | - | Atu0925 | 0.46 | +1.6 | |
914,086 | + | Atu0925 | 0.80 | -0.3 | |
914,185 | - | -0.6 | |||
914,247 | - | Atu0926 | 0.10 | -1.2 | |
914,380 | - | Atu0926 | 0.33 | +0.4 | |
914,427 | + | Atu0926 | 0.41 | +0.5 | |
914,435 | - | Atu0926 | 0.42 | +0.1 | |
914,531 | + | Atu0926 | 0.59 | +0.5 | |
914,554 | + | Atu0926 | 0.63 | +0.3 | |
914,576 | - | Atu0926 | 0.66 | -0.2 | |
914,605 | - | Atu0926 | 0.71 | -0.0 |
Or see this region's nucleotide sequence