Experiment: Acetovanillone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0241 and Atu0242 are separated by 72 nucleotides Atu0242 and Atu0243 overlap by 4 nucleotides Atu0243 and Atu8117 are separated by 66 nucleotides
Atu0241: Atu0241 - GTP-binding protein LepA, at 240,039 to 241,865
Atu0241
Atu0242: Atu0242 - carbon-nitrogen hydrolase, at 241,938 to 242,807
Atu0242
Atu0243: Atu0243 - hypothetical protein, at 242,804 to 243,415
Atu0243
Atu8117: Atu8117 - hypothetical protein, at 243,482 to 243,883
Atu8117
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1 at 241.960 kb on - strand at 241.982 kb on + strand at 242.111 kb on + strand, within Atu0242 at 242.154 kb on + strand, within Atu0242 at 242.162 kb on - strand, within Atu0242 at 242.282 kb on + strand, within Atu0242 at 242.287 kb on + strand, within Atu0242 at 242.348 kb on - strand, within Atu0242 at 242.465 kb on - strand, within Atu0242 at 242.535 kb on - strand, within Atu0242 at 242.569 kb on + strand, within Atu0242 at 242.576 kb on + strand, within Atu0242 at 242.622 kb on + strand, within Atu0242 at 242.756 kb on + strand at 242.761 kb on + strand at 242.761 kb on + strand at 242.764 kb on - strand at 242.764 kb on - strand at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.135 kb on - strand, within Atu0243 at 243.142 kb on - strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.169 kb on + strand, within Atu0243 at 243.310 kb on - strand, within Atu0243 at 243.344 kb on - strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.425 kb on + strand at 243.433 kb on - strand at 243.433 kb on - strand at 243.518 kb on - strand at 243.534 kb on - strand, within Atu8117 at 243.580 kb on - strand, within Atu8117 at 243.713 kb on - strand, within Atu8117
Per-strain Table
Position Strand Gene LocusTag Fraction Acetovanillone 5 mM remove 241,960 - -0.3 241,982 + +0.2 242,111 + Atu0242 0.20 -0.3 242,154 + Atu0242 0.25 -0.5 242,162 - Atu0242 0.26 -0.9 242,282 + Atu0242 0.40 +0.1 242,287 + Atu0242 0.40 -0.7 242,348 - Atu0242 0.47 -0.5 242,465 - Atu0242 0.61 +1.6 242,535 - Atu0242 0.69 -0.5 242,569 + Atu0242 0.73 -0.9 242,576 + Atu0242 0.73 -1.2 242,622 + Atu0242 0.79 -0.2 242,756 + -0.1 242,761 + -0.3 242,761 + -0.9 242,764 - -1.2 242,764 - -0.1 243,067 + Atu0243 0.43 -0.2 243,067 + Atu0243 0.43 -0.0 243,067 + Atu0243 0.43 -0.9 243,067 + Atu0243 0.43 -1.4 243,067 + Atu0243 0.43 -0.8 243,067 + Atu0243 0.43 -0.4 243,075 - Atu0243 0.44 -1.2 243,075 - Atu0243 0.44 +0.2 243,075 - Atu0243 0.44 +0.0 243,075 - Atu0243 0.44 +0.1 243,075 - Atu0243 0.44 +0.5 243,135 - Atu0243 0.54 +0.0 243,142 - Atu0243 0.55 -0.3 243,159 + Atu0243 0.58 +0.2 243,159 + Atu0243 0.58 -0.7 243,167 - Atu0243 0.59 +0.1 243,167 - Atu0243 0.59 -0.0 243,169 + Atu0243 0.60 -1.0 243,310 - Atu0243 0.83 +0.1 243,344 - Atu0243 0.88 -0.4 243,345 + Atu0243 0.88 -0.4 243,345 + Atu0243 0.88 -0.4 243,425 + -0.2 243,433 - -1.0 243,433 - +1.0 243,518 - -0.8 243,534 - Atu8117 0.13 -1.1 243,580 - Atu8117 0.24 +0.2 243,713 - Atu8117 0.57 -0.1
Or see this region's nucleotide sequence