Strain Fitness in Agrobacterium fabrum C58 around Atu2722
Experiment: Acetovanillone 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Acetovanillone 5 mM |
---|---|---|---|---|---|
remove | |||||
2,707,472 | + | +0.2 | |||
2,707,530 | - | -0.3 | |||
2,707,540 | - | -0.9 | |||
2,707,577 | + | Atu2722 | 0.13 | -1.2 | |
2,707,585 | - | Atu2722 | 0.15 | -0.4 | |
2,707,600 | - | Atu2722 | 0.17 | -0.5 | |
2,707,791 | + | Atu2722 | 0.46 | -0.6 | |
2,707,791 | + | Atu2722 | 0.46 | +0.1 | |
2,707,799 | - | Atu2722 | 0.47 | -0.4 | |
2,707,873 | + | Atu2722 | 0.58 | -0.3 | |
2,707,959 | + | Atu2722 | 0.71 | +0.7 | |
2,707,977 | - | Atu2722 | 0.74 | +0.1 | |
2,708,025 | - | Atu2722 | 0.81 | -0.7 | |
2,708,077 | + | Atu2722 | 0.89 | -0.6 | |
2,708,171 | + | -0.2 |
Or see this region's nucleotide sequence