Strain Fitness in Agrobacterium fabrum C58 around Atu1291

Experiment: Acetovanillone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1289 and Atu1290 are separated by 90 nucleotidesAtu1290 and Atu1291 are separated by 20 nucleotidesAtu1291 and Atu1292 are separated by 96 nucleotides Atu1289: Atu1289 - ABC transporter, membrane spanning protein, at 1,277,188 to 1,278,495 Atu1289 Atu1290: Atu1290 - ABC transporter, nucleotide binding/ATPase protein (lipoprotein), at 1,278,586 to 1,279,194 Atu1290 Atu1291: Atu1291 - hypothetical protein, at 1,279,215 to 1,279,607 Atu1291 Atu1292: Atu1292 - DNA polymerase III, alpha chain, at 1,279,704 to 1,283,207 Atu1292 Position (kb) 1279 1280Strain fitness (log2 ratio) -1 0 1at 1279.308 kb on - strand, within Atu1291at 1279.451 kb on - strand, within Atu1291at 1279.526 kb on - strand, within Atu1291

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetovanillone 5 mM
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1,279,308 - Atu1291 0.24 -0.4
1,279,451 - Atu1291 0.60 -0.2
1,279,526 - Atu1291 0.79 -0.9

Or see this region's nucleotide sequence