Strain Fitness in Agrobacterium fabrum C58 around Atu0967

Experiment: Acetovanillone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0965 and Atu0966 overlap by 4 nucleotidesAtu0966 and Atu0967 are separated by 17 nucleotidesAtu0967 and Atu0968 are separated by 1 nucleotidesAtu0968 and Atu8142 are separated by 139 nucleotidesAtu8142 and Atu0970 are separated by 93 nucleotides Atu0965: Atu0965 - hypothetical protein, at 952,990 to 953,874 Atu0965 Atu0966: Atu0966 - hypothetical protein, at 953,871 to 954,305 Atu0966 Atu0967: Atu0967 - hypothetical protein, at 954,323 to 958,123 Atu0967 Atu0968: Atu0968 - hypothetical protein, at 958,125 to 958,364 Atu0968 Atu8142: Atu8142 - hypothetical protein, at 958,504 to 958,758 Atu8142 Atu0970: Atu0970 - two component response regulator, at 958,852 to 959,523 Atu0970 Position (kb) 954 955 956 957 958 959Strain fitness (log2 ratio) -1 0 1 2at 953.328 kb on - strand, within Atu0965at 953.390 kb on + strand, within Atu0965at 953.393 kb on - strand, within Atu0965at 953.398 kb on - strand, within Atu0965at 953.398 kb on - strand, within Atu0965at 953.402 kb on + strand, within Atu0965at 953.410 kb on - strand, within Atu0965at 953.426 kb on - strand, within Atu0965at 953.426 kb on - strand, within Atu0965at 953.489 kb on + strand, within Atu0965at 953.586 kb on + strand, within Atu0965at 953.799 kb on + strandat 953.900 kb on - strandat 954.128 kb on + strand, within Atu0966at 954.136 kb on - strand, within Atu0966at 954.217 kb on + strand, within Atu0966at 954.433 kb on - strandat 954.450 kb on - strandat 954.468 kb on - strandat 954.475 kb on + strandat 954.475 kb on + strandat 954.475 kb on + strandat 954.552 kb on - strandat 954.559 kb on + strandat 954.559 kb on + strandat 954.559 kb on + strandat 954.563 kb on - strandat 954.567 kb on - strandat 954.593 kb on - strandat 954.601 kb on - strandat 954.613 kb on + strandat 954.624 kb on + strandat 954.632 kb on - strandat 954.771 kb on + strand, within Atu0967at 954.803 kb on - strand, within Atu0967at 954.838 kb on + strand, within Atu0967at 954.838 kb on + strand, within Atu0967at 954.903 kb on - strand, within Atu0967at 954.935 kb on + strand, within Atu0967at 954.935 kb on + strand, within Atu0967at 954.988 kb on - strand, within Atu0967at 955.000 kb on - strand, within Atu0967at 955.027 kb on - strand, within Atu0967at 955.027 kb on - strand, within Atu0967at 955.109 kb on - strand, within Atu0967at 955.137 kb on + strand, within Atu0967at 955.211 kb on + strand, within Atu0967at 955.280 kb on - strand, within Atu0967at 955.291 kb on - strand, within Atu0967at 955.299 kb on - strand, within Atu0967at 955.359 kb on + strand, within Atu0967at 955.359 kb on + strand, within Atu0967at 955.359 kb on + strand, within Atu0967at 955.359 kb on + strand, within Atu0967at 955.360 kb on + strand, within Atu0967at 955.385 kb on - strand, within Atu0967at 955.506 kb on - strand, within Atu0967at 955.565 kb on + strand, within Atu0967at 955.565 kb on + strand, within Atu0967at 955.565 kb on + strand, within Atu0967at 955.565 kb on + strand, within Atu0967at 955.573 kb on - strand, within Atu0967at 955.573 kb on - strand, within Atu0967at 955.573 kb on - strand, within Atu0967at 955.603 kb on + strand, within Atu0967at 955.603 kb on + strand, within Atu0967at 955.623 kb on + strand, within Atu0967at 955.623 kb on + strand, within Atu0967at 955.623 kb on + strand, within Atu0967at 955.636 kb on - strand, within Atu0967at 955.638 kb on + strand, within Atu0967at 955.667 kb on + strand, within Atu0967at 955.668 kb on - strand, within Atu0967at 955.767 kb on - strand, within Atu0967at 955.791 kb on - strand, within Atu0967at 955.827 kb on + strand, within Atu0967at 955.969 kb on + strand, within Atu0967at 955.985 kb on - strand, within Atu0967at 955.986 kb on + strand, within Atu0967at 955.995 kb on - strand, within Atu0967at 956.015 kb on + strand, within Atu0967at 956.109 kb on + strand, within Atu0967at 956.132 kb on - strand, within Atu0967at 956.169 kb on - strand, within Atu0967at 956.341 kb on + strand, within Atu0967at 956.386 kb on - strand, within Atu0967at 956.393 kb on - strand, within Atu0967at 956.417 kb on - strand, within Atu0967at 956.422 kb on - strand, within Atu0967at 956.429 kb on + strand, within Atu0967at 956.516 kb on + strand, within Atu0967at 956.519 kb on - strand, within Atu0967at 956.525 kb on + strand, within Atu0967at 956.585 kb on - strand, within Atu0967at 956.585 kb on - strand, within Atu0967at 956.669 kb on - strand, within Atu0967at 956.669 kb on - strand, within Atu0967at 956.916 kb on + strand, within Atu0967at 957.060 kb on - strand, within Atu0967at 957.086 kb on - strand, within Atu0967at 957.107 kb on + strand, within Atu0967at 957.133 kb on - strand, within Atu0967at 957.145 kb on + strand, within Atu0967at 957.166 kb on + strand, within Atu0967at 957.344 kb on + strand, within Atu0967at 957.464 kb on + strand, within Atu0967at 957.488 kb on + strand, within Atu0967at 957.645 kb on + strand, within Atu0967at 957.726 kb on - strand, within Atu0967at 957.804 kb on - strandat 957.843 kb on + strandat 957.851 kb on - strandat 957.863 kb on + strandat 957.870 kb on + strandat 957.896 kb on - strandat 957.944 kb on + strandat 957.952 kb on + strandat 957.969 kb on + strandat 957.980 kb on - strandat 958.002 kb on + strandat 958.072 kb on + strandat 958.163 kb on - strand, within Atu0968at 958.163 kb on - strand, within Atu0968at 958.165 kb on + strand, within Atu0968at 958.165 kb on + strand, within Atu0968at 958.165 kb on + strand, within Atu0968at 958.174 kb on - strand, within Atu0968at 958.178 kb on + strand, within Atu0968at 958.179 kb on + strand, within Atu0968at 958.235 kb on - strand, within Atu0968at 958.260 kb on + strand, within Atu0968at 958.260 kb on + strand, within Atu0968at 958.284 kb on + strand, within Atu0968at 958.287 kb on - strand, within Atu0968at 958.289 kb on + strand, within Atu0968at 958.297 kb on - strand, within Atu0968at 958.326 kb on + strand, within Atu0968at 958.326 kb on + strand, within Atu0968at 958.334 kb on - strand, within Atu0968at 958.345 kb on - strandat 958.867 kb on + strandat 959.105 kb on - strand, within Atu0970

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetovanillone 5 mM
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953,328 - Atu0965 0.38 -0.4
953,390 + Atu0965 0.45 +0.0
953,393 - Atu0965 0.46 -0.5
953,398 - Atu0965 0.46 -0.1
953,398 - Atu0965 0.46 -0.5
953,402 + Atu0965 0.47 +0.4
953,410 - Atu0965 0.47 +0.1
953,426 - Atu0965 0.49 +0.8
953,426 - Atu0965 0.49 +0.1
953,489 + Atu0965 0.56 -0.5
953,586 + Atu0965 0.67 +0.6
953,799 + +0.5
953,900 - -0.4
954,128 + Atu0966 0.59 -0.1
954,136 - Atu0966 0.61 -0.3
954,217 + Atu0966 0.80 +0.4
954,433 - -0.9
954,450 - +0.1
954,468 - +0.5
954,475 + -0.1
954,475 + -1.0
954,475 + +0.1
954,552 - -0.1
954,559 + +0.3
954,559 + +0.6
954,559 + +0.0
954,563 - +1.3
954,567 - -0.3
954,593 - +0.2
954,601 - -0.6
954,613 + -0.3
954,624 + +0.8
954,632 - +0.1
954,771 + Atu0967 0.12 -0.5
954,803 - Atu0967 0.13 +0.1
954,838 + Atu0967 0.14 +2.2
954,838 + Atu0967 0.14 -0.1
954,903 - Atu0967 0.15 +0.1
954,935 + Atu0967 0.16 -0.2
954,935 + Atu0967 0.16 -0.0
954,988 - Atu0967 0.17 +0.9
955,000 - Atu0967 0.18 -0.2
955,027 - Atu0967 0.19 +0.1
955,027 - Atu0967 0.19 -0.2
955,109 - Atu0967 0.21 +0.3
955,137 + Atu0967 0.21 -0.1
955,211 + Atu0967 0.23 +0.7
955,280 - Atu0967 0.25 +0.6
955,291 - Atu0967 0.25 +0.2
955,299 - Atu0967 0.26 -0.3
955,359 + Atu0967 0.27 -1.0
955,359 + Atu0967 0.27 +0.3
955,359 + Atu0967 0.27 +0.1
955,359 + Atu0967 0.27 -0.5
955,360 + Atu0967 0.27 +0.1
955,385 - Atu0967 0.28 -0.1
955,506 - Atu0967 0.31 +0.9
955,565 + Atu0967 0.33 -0.1
955,565 + Atu0967 0.33 -0.2
955,565 + Atu0967 0.33 -0.3
955,565 + Atu0967 0.33 -0.5
955,573 - Atu0967 0.33 -0.4
955,573 - Atu0967 0.33 +0.1
955,573 - Atu0967 0.33 +0.1
955,603 + Atu0967 0.34 -0.1
955,603 + Atu0967 0.34 -0.3
955,623 + Atu0967 0.34 -0.1
955,623 + Atu0967 0.34 -0.2
955,623 + Atu0967 0.34 -0.2
955,636 - Atu0967 0.35 +0.1
955,638 + Atu0967 0.35 +0.0
955,667 + Atu0967 0.35 -0.2
955,668 - Atu0967 0.35 +0.6
955,767 - Atu0967 0.38 -0.5
955,791 - Atu0967 0.39 -0.2
955,827 + Atu0967 0.40 -0.0
955,969 + Atu0967 0.43 +0.2
955,985 - Atu0967 0.44 +0.1
955,986 + Atu0967 0.44 +1.1
955,995 - Atu0967 0.44 -0.8
956,015 + Atu0967 0.45 -0.8
956,109 + Atu0967 0.47 +0.2
956,132 - Atu0967 0.48 +1.1
956,169 - Atu0967 0.49 +0.3
956,341 + Atu0967 0.53 +0.8
956,386 - Atu0967 0.54 -0.2
956,393 - Atu0967 0.54 -0.3
956,417 - Atu0967 0.55 -0.7
956,422 - Atu0967 0.55 -0.0
956,429 + Atu0967 0.55 +0.9
956,516 + Atu0967 0.58 -0.3
956,519 - Atu0967 0.58 +0.0
956,525 + Atu0967 0.58 +0.1
956,585 - Atu0967 0.60 +0.6
956,585 - Atu0967 0.60 -0.4
956,669 - Atu0967 0.62 +0.1
956,669 - Atu0967 0.62 -0.6
956,916 + Atu0967 0.68 +0.1
957,060 - Atu0967 0.72 -0.1
957,086 - Atu0967 0.73 +1.1
957,107 + Atu0967 0.73 +0.7
957,133 - Atu0967 0.74 +0.9
957,145 + Atu0967 0.74 +0.1
957,166 + Atu0967 0.75 -0.1
957,344 + Atu0967 0.79 -0.3
957,464 + Atu0967 0.83 -0.7
957,488 + Atu0967 0.83 +0.8
957,645 + Atu0967 0.87 +0.4
957,726 - Atu0967 0.90 -0.1
957,804 - -0.3
957,843 + -0.1
957,851 - +0.3
957,863 + -0.1
957,870 + +0.3
957,896 - +0.2
957,944 + -0.3
957,952 + +0.1
957,969 + +0.3
957,980 - -0.1
958,002 + +0.9
958,072 + -0.1
958,163 - Atu0968 0.16 +0.8
958,163 - Atu0968 0.16 +0.0
958,165 + Atu0968 0.17 +0.6
958,165 + Atu0968 0.17 -0.1
958,165 + Atu0968 0.17 +0.3
958,174 - Atu0968 0.20 -0.1
958,178 + Atu0968 0.22 -0.4
958,179 + Atu0968 0.23 -0.1
958,235 - Atu0968 0.46 +0.2
958,260 + Atu0968 0.56 +0.0
958,260 + Atu0968 0.56 -0.2
958,284 + Atu0968 0.66 +0.1
958,287 - Atu0968 0.68 -0.4
958,289 + Atu0968 0.68 -0.1
958,297 - Atu0968 0.72 +0.0
958,326 + Atu0968 0.84 -0.1
958,326 + Atu0968 0.84 +0.2
958,334 - Atu0968 0.87 +0.1
958,345 - +0.5
958,867 + +1.1
959,105 - Atu0970 0.38 +0.2

Or see this region's nucleotide sequence