Experiment: Acetovanillone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0783 and Atu0784 are separated by 178 nucleotides Atu0784 and Atu0785 overlap by 4 nucleotides Atu0785 and Atu0786 are separated by 93 nucleotides
Atu0783: Atu0783 - hypothetical protein, at 778,210 to 779,415
Atu0783
Atu0784: Atu0784 - hypothetical protein, at 779,594 to 782,509
Atu0784
Atu0785: Atu0785 - ribosomal-protein (S5)-alanine N-acetyltransferase, at 782,506 to 783,105
Atu0785
Atu0786: Atu0786 - peptidase, family M16, at 783,199 to 784,497
Atu0786
Position (kb) 779
780
781
782
783 Strain fitness (log2 ratio) -1
0
1 at 778.631 kb on + strand, within Atu0783 at 778.691 kb on - strand, within Atu0783 at 778.705 kb on + strand, within Atu0783 at 778.821 kb on + strand, within Atu0783 at 779.067 kb on - strand, within Atu0783 at 779.130 kb on + strand, within Atu0783 at 779.201 kb on + strand, within Atu0783 at 779.283 kb on + strand, within Atu0783 at 779.304 kb on + strand at 779.304 kb on + strand at 779.312 kb on - strand at 779.446 kb on - strand at 779.486 kb on - strand at 779.538 kb on + strand at 779.583 kb on - strand at 779.651 kb on + strand at 779.792 kb on - strand at 779.969 kb on - strand, within Atu0784 at 780.201 kb on - strand, within Atu0784 at 780.205 kb on + strand, within Atu0784 at 780.326 kb on + strand, within Atu0784 at 782.518 kb on - strand at 782.757 kb on - strand, within Atu0785 at 782.779 kb on - strand, within Atu0785 at 782.794 kb on + strand, within Atu0785 at 782.797 kb on - strand, within Atu0785 at 782.802 kb on - strand, within Atu0785 at 783.046 kb on - strand at 783.051 kb on + strand at 783.064 kb on - strand at 783.066 kb on + strand at 783.125 kb on - strand at 783.210 kb on + strand at 783.210 kb on + strand at 783.337 kb on + strand, within Atu0786
Per-strain Table
Position Strand Gene LocusTag Fraction Acetovanillone 5 mM remove 778,631 + Atu0783 0.35 -0.3 778,691 - Atu0783 0.40 -0.1 778,705 + Atu0783 0.41 -0.5 778,821 + Atu0783 0.51 -0.2 779,067 - Atu0783 0.71 +0.3 779,130 + Atu0783 0.76 +0.5 779,201 + Atu0783 0.82 -0.1 779,283 + Atu0783 0.89 -0.2 779,304 + -0.0 779,304 + +0.0 779,312 - -0.9 779,446 - +0.3 779,486 - +0.0 779,538 + -0.4 779,583 - -0.1 779,651 + -1.0 779,792 - -0.7 779,969 - Atu0784 0.13 +1.6 780,201 - Atu0784 0.21 -1.6 780,205 + Atu0784 0.21 -0.4 780,326 + Atu0784 0.25 -0.5 782,518 - +0.1 782,757 - Atu0785 0.42 +0.0 782,779 - Atu0785 0.46 +0.6 782,794 + Atu0785 0.48 +0.1 782,797 - Atu0785 0.48 -0.4 782,802 - Atu0785 0.49 +0.2 783,046 - +0.0 783,051 + -0.2 783,064 - -0.2 783,066 + -0.5 783,125 - +0.3 783,210 + +0.5 783,210 + +0.1 783,337 + Atu0786 0.11 +0.5
Or see this region's nucleotide sequence