Experiment: Acetovanillone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0591 and Atu0592 are separated by 248 nucleotides Atu0592 and Atu0593 are separated by 1 nucleotides
Atu0591: Atu0591 - ABC transporter, substrate binding protein (alpha-glucoside), at 574,504 to 575,865
Atu0591
Atu0592: Atu0592 - ABC transporter, membrane spanning protein, at 576,114 to 577,034
Atu0592
Atu0593: Atu0593 - ABC transporter, membrane spanning protein, at 577,036 to 578,196
Atu0593
Position (kb) 576
577
578 Strain fitness (log2 ratio) -2
-1
0
1 at 575.148 kb on - strand, within Atu0591 at 575.222 kb on - strand, within Atu0591 at 575.368 kb on + strand, within Atu0591 at 575.536 kb on + strand, within Atu0591 at 575.628 kb on + strand, within Atu0591 at 575.636 kb on - strand, within Atu0591 at 575.644 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.646 kb on + strand, within Atu0591 at 575.652 kb on - strand, within Atu0591 at 575.654 kb on - strand, within Atu0591 at 575.654 kb on - strand, within Atu0591 at 575.862 kb on - strand at 575.968 kb on + strand at 575.980 kb on + strand at 575.988 kb on - strand at 576.005 kb on + strand at 576.005 kb on + strand at 576.013 kb on - strand at 576.020 kb on - strand at 576.057 kb on - strand at 576.138 kb on - strand at 576.163 kb on - strand at 576.215 kb on - strand, within Atu0592 at 576.257 kb on + strand, within Atu0592 at 576.415 kb on - strand, within Atu0592 at 576.542 kb on + strand, within Atu0592 at 576.557 kb on + strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.767 kb on + strand, within Atu0592 at 576.782 kb on + strand, within Atu0592 at 576.814 kb on + strand, within Atu0592 at 576.981 kb on - strand at 577.035 kb on + strand at 577.089 kb on + strand at 577.094 kb on + strand at 577.096 kb on + strand at 577.096 kb on + strand at 577.213 kb on - strand, within Atu0593 at 577.415 kb on + strand, within Atu0593 at 577.426 kb on - strand, within Atu0593 at 577.428 kb on + strand, within Atu0593 at 577.442 kb on + strand, within Atu0593 at 577.443 kb on + strand, within Atu0593 at 577.443 kb on - strand, within Atu0593 at 577.522 kb on + strand, within Atu0593 at 577.530 kb on - strand, within Atu0593 at 577.586 kb on + strand, within Atu0593 at 577.627 kb on - strand, within Atu0593 at 577.769 kb on - strand, within Atu0593 at 577.817 kb on + strand, within Atu0593 at 578.027 kb on + strand, within Atu0593
Per-strain Table
Position Strand Gene LocusTag Fraction Acetovanillone 5 mM remove 575,148 - Atu0591 0.47 -0.3 575,222 - Atu0591 0.53 +1.1 575,368 + Atu0591 0.63 -0.2 575,536 + Atu0591 0.76 -0.3 575,628 + Atu0591 0.83 +0.0 575,636 - Atu0591 0.83 -0.6 575,644 + Atu0591 0.84 -0.1 575,646 + Atu0591 0.84 -0.2 575,646 + Atu0591 0.84 -0.1 575,646 + Atu0591 0.84 -0.3 575,646 + Atu0591 0.84 +0.0 575,646 + Atu0591 0.84 +0.1 575,652 - Atu0591 0.84 +0.3 575,654 - Atu0591 0.84 +0.8 575,654 - Atu0591 0.84 -1.0 575,862 - -0.2 575,968 + +0.0 575,980 + -0.1 575,988 - +0.3 576,005 + -0.0 576,005 + -0.2 576,013 - +0.4 576,020 - -0.2 576,057 - -0.0 576,138 - -1.3 576,163 - -0.6 576,215 - Atu0592 0.11 -0.1 576,257 + Atu0592 0.16 -0.9 576,415 - Atu0592 0.33 -0.4 576,542 + Atu0592 0.46 -2.2 576,557 + Atu0592 0.48 -0.9 576,565 - Atu0592 0.49 +0.2 576,565 - Atu0592 0.49 -0.6 576,565 - Atu0592 0.49 +0.1 576,767 + Atu0592 0.71 -0.3 576,782 + Atu0592 0.73 -0.6 576,814 + Atu0592 0.76 -0.4 576,981 - -0.2 577,035 + -0.2 577,089 + +0.0 577,094 + -1.0 577,096 + -1.1 577,096 + -0.5 577,213 - Atu0593 0.15 -0.1 577,415 + Atu0593 0.33 +0.4 577,426 - Atu0593 0.34 +0.1 577,428 + Atu0593 0.34 -0.4 577,442 + Atu0593 0.35 +0.4 577,443 + Atu0593 0.35 -0.5 577,443 - Atu0593 0.35 +0.4 577,522 + Atu0593 0.42 -0.3 577,530 - Atu0593 0.43 -0.2 577,586 + Atu0593 0.47 +0.2 577,627 - Atu0593 0.51 -0.6 577,769 - Atu0593 0.63 +0.3 577,817 + Atu0593 0.67 -0.1 578,027 + Atu0593 0.85 +0.6
Or see this region's nucleotide sequence