Experiment: Acetovanillone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8082 and Atu0447 are separated by 56 nucleotides Atu0447 and Atu0448 overlap by 4 nucleotides Atu0448 and Atu0449 overlap by 1 nucleotides Atu0449 and Atu0450 are separated by 109 nucleotides Atu0450 and Atu8125 are separated by 244 nucleotides
Atu8082: Atu8082 - hypothetical protein, at 441,917 to 442,468
Atu8082
Atu0447: Atu0447 - hypothetical protein, at 442,525 to 443,106
Atu0447
Atu0448: Atu0448 - hypothetical protein, at 443,103 to 443,396
Atu0448
Atu0449: Atu0449 - hypothetical protein, at 443,396 to 444,616
Atu0449
Atu0450: Atu0450 - transcription antitermination protein, at 444,726 to 445,292
Atu0450
Atu8125: Atu8125 - hypothetical protein, at 445,537 to 446,106
Atu8125
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2 at 442.729 kb on - strand, within Atu0447 at 442.859 kb on - strand, within Atu0447 at 442.869 kb on + strand, within Atu0447 at 442.956 kb on + strand, within Atu0447 at 443.020 kb on - strand, within Atu0447 at 443.022 kb on + strand, within Atu0447 at 443.058 kb on - strand at 443.191 kb on + strand, within Atu0448 at 443.191 kb on + strand, within Atu0448 at 443.192 kb on - strand, within Atu0448 at 443.293 kb on + strand, within Atu0448 at 443.293 kb on - strand, within Atu0448 at 443.298 kb on + strand, within Atu0448 at 443.336 kb on - strand, within Atu0448 at 443.386 kb on + strand at 443.386 kb on + strand at 443.386 kb on + strand at 443.391 kb on - strand at 443.412 kb on + strand at 443.483 kb on + strand at 443.558 kb on - strand, within Atu0449 at 443.585 kb on + strand, within Atu0449 at 443.713 kb on + strand, within Atu0449 at 443.774 kb on + strand, within Atu0449 at 443.964 kb on - strand, within Atu0449 at 444.008 kb on - strand, within Atu0449 at 444.035 kb on - strand, within Atu0449 at 444.235 kb on - strand, within Atu0449 at 444.240 kb on - strand, within Atu0449 at 444.287 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.376 kb on - strand, within Atu0449 at 444.376 kb on - strand, within Atu0449 at 444.378 kb on - strand, within Atu0449 at 444.389 kb on + strand, within Atu0449 at 444.401 kb on + strand, within Atu0449 at 444.408 kb on + strand, within Atu0449 at 444.408 kb on - strand, within Atu0449 at 444.409 kb on - strand, within Atu0449 at 444.427 kb on - strand, within Atu0449 at 444.439 kb on + strand, within Atu0449 at 444.464 kb on - strand, within Atu0449 at 444.480 kb on - strand, within Atu0449 at 444.518 kb on - strand at 444.649 kb on + strand at 444.656 kb on + strand at 444.770 kb on - strand at 444.776 kb on + strand at 444.922 kb on + strand, within Atu0450 at 444.932 kb on + strand, within Atu0450 at 444.935 kb on - strand, within Atu0450 at 444.940 kb on - strand, within Atu0450 at 444.940 kb on - strand, within Atu0450 at 444.967 kb on + strand, within Atu0450 at 444.970 kb on - strand, within Atu0450 at 444.977 kb on + strand, within Atu0450 at 444.993 kb on - strand, within Atu0450 at 445.010 kb on + strand, within Atu0450 at 445.010 kb on + strand, within Atu0450 at 445.018 kb on - strand, within Atu0450 at 445.092 kb on - strand, within Atu0450 at 445.099 kb on - strand, within Atu0450 at 445.101 kb on + strand, within Atu0450 at 445.103 kb on + strand, within Atu0450 at 445.111 kb on - strand, within Atu0450 at 445.150 kb on - strand, within Atu0450 at 445.224 kb on - strand, within Atu0450 at 445.227 kb on - strand, within Atu0450 at 445.265 kb on - strand at 445.267 kb on + strand at 445.275 kb on - strand at 445.292 kb on + strand at 445.300 kb on - strand at 445.300 kb on - strand at 445.305 kb on - strand at 445.443 kb on + strand at 445.481 kb on + strand at 445.508 kb on + strand at 445.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acetovanillone 5 mM remove 442,729 - Atu0447 0.35 +0.1 442,859 - Atu0447 0.57 +0.1 442,869 + Atu0447 0.59 -0.5 442,956 + Atu0447 0.74 -0.2 443,020 - Atu0447 0.85 +0.7 443,022 + Atu0447 0.85 -0.1 443,058 - +0.6 443,191 + Atu0448 0.30 -0.4 443,191 + Atu0448 0.30 +0.4 443,192 - Atu0448 0.30 +0.1 443,293 + Atu0448 0.65 +0.5 443,293 - Atu0448 0.65 -0.2 443,298 + Atu0448 0.66 -0.7 443,336 - Atu0448 0.79 -0.5 443,386 + -0.3 443,386 + +1.1 443,386 + +0.1 443,391 - -0.4 443,412 + -0.5 443,483 + -0.4 443,558 - Atu0449 0.13 +0.4 443,585 + Atu0449 0.15 -0.4 443,713 + Atu0449 0.26 -0.3 443,774 + Atu0449 0.31 +1.2 443,964 - Atu0449 0.47 +1.7 444,008 - Atu0449 0.50 +0.1 444,035 - Atu0449 0.52 -1.5 444,235 - Atu0449 0.69 -0.3 444,240 - Atu0449 0.69 -1.1 444,287 - Atu0449 0.73 -0.2 444,339 - Atu0449 0.77 -0.2 444,339 - Atu0449 0.77 -0.1 444,339 - Atu0449 0.77 -0.9 444,376 - Atu0449 0.80 -0.3 444,376 - Atu0449 0.80 +0.3 444,378 - Atu0449 0.80 -0.1 444,389 + Atu0449 0.81 -0.3 444,401 + Atu0449 0.82 +1.2 444,408 + Atu0449 0.83 -0.2 444,408 - Atu0449 0.83 -2.1 444,409 - Atu0449 0.83 +0.4 444,427 - Atu0449 0.84 -0.6 444,439 + Atu0449 0.85 -0.4 444,464 - Atu0449 0.87 -0.9 444,480 - Atu0449 0.89 +0.2 444,518 - -0.2 444,649 + +0.9 444,656 + +1.6 444,770 - +1.7 444,776 + +1.5 444,922 + Atu0450 0.35 +1.9 444,932 + Atu0450 0.36 +1.7 444,935 - Atu0450 0.37 +1.5 444,940 - Atu0450 0.38 +1.5 444,940 - Atu0450 0.38 +1.2 444,967 + Atu0450 0.43 +2.1 444,970 - Atu0450 0.43 +1.6 444,977 + Atu0450 0.44 +1.8 444,993 - Atu0450 0.47 +1.7 445,010 + Atu0450 0.50 +2.0 445,010 + Atu0450 0.50 +1.0 445,018 - Atu0450 0.51 +1.6 445,092 - Atu0450 0.65 +0.9 445,099 - Atu0450 0.66 +1.7 445,101 + Atu0450 0.66 +2.0 445,103 + Atu0450 0.66 +1.8 445,111 - Atu0450 0.68 +1.3 445,150 - Atu0450 0.75 +1.7 445,224 - Atu0450 0.88 +1.7 445,227 - Atu0450 0.88 +1.0 445,265 - +1.8 445,267 + +1.7 445,275 - +1.7 445,292 + +2.5 445,300 - +1.6 445,300 - +1.7 445,305 - +1.8 445,443 + +1.7 445,481 + +1.3 445,508 + +1.6 445,571 + +1.2
Or see this region's nucleotide sequence