Experiment: Acetovanillone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0436 and Atu0437 overlap by 1 nucleotides Atu0437 and Atu0438 are separated by 1 nucleotides Atu0438 and Atu8122 are separated by 282 nucleotides
Atu0436: Atu0436 - hypothetical protein, at 430,993 to 433,149
Atu0436
Atu0437: Atu0437 - hypothetical protein, at 433,149 to 433,829
Atu0437
Atu0438: Atu0438 - phage-related integrase, at 433,831 to 434,859
Atu0438
Atu8122: Atu8122 - hypothetical protein, at 435,142 to 436,047
Atu8122
Position (kb) 433
434
435 Strain fitness (log2 ratio) -1
0
1
2 at 432.850 kb on + strand, within Atu0436 at 432.850 kb on + strand, within Atu0436 at 432.858 kb on - strand, within Atu0436 at 432.861 kb on + strand, within Atu0436 at 432.876 kb on - strand, within Atu0436 at 432.878 kb on + strand, within Atu0436 at 433.333 kb on - strand, within Atu0437 at 433.346 kb on - strand, within Atu0437 at 433.516 kb on + strand, within Atu0437 at 433.519 kb on - strand, within Atu0437 at 433.574 kb on + strand, within Atu0437 at 433.633 kb on - strand, within Atu0437 at 433.653 kb on + strand, within Atu0437 at 433.846 kb on - strand at 433.866 kb on - strand at 433.875 kb on + strand at 434.003 kb on + strand, within Atu0438 at 434.013 kb on + strand, within Atu0438 at 434.166 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.336 kb on + strand, within Atu0438 at 434.344 kb on - strand, within Atu0438 at 434.344 kb on - strand, within Atu0438 at 434.354 kb on - strand, within Atu0438 at 434.382 kb on + strand, within Atu0438 at 434.389 kb on + strand, within Atu0438 at 434.392 kb on + strand, within Atu0438 at 434.395 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.400 kb on - strand, within Atu0438 at 434.418 kb on + strand, within Atu0438 at 434.450 kb on - strand, within Atu0438 at 434.507 kb on + strand, within Atu0438 at 434.573 kb on + strand, within Atu0438 at 434.575 kb on + strand, within Atu0438 at 434.583 kb on - strand, within Atu0438 at 434.600 kb on - strand, within Atu0438 at 434.612 kb on - strand, within Atu0438 at 434.663 kb on + strand, within Atu0438 at 434.671 kb on - strand, within Atu0438 at 434.671 kb on - strand, within Atu0438 at 434.676 kb on - strand, within Atu0438 at 434.708 kb on + strand, within Atu0438 at 434.731 kb on + strand, within Atu0438 at 434.784 kb on - strand at 434.820 kb on + strand at 434.820 kb on + strand at 434.821 kb on - strand at 434.821 kb on - strand at 434.821 kb on - strand at 434.994 kb on + strand at 434.996 kb on + strand at 435.028 kb on + strand at 435.083 kb on - strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.207 kb on + strand at 435.229 kb on - strand at 435.260 kb on - strand, within Atu8122 at 435.446 kb on + strand, within Atu8122 at 435.488 kb on + strand, within Atu8122 at 435.489 kb on + strand, within Atu8122 at 435.688 kb on - strand, within Atu8122 at 435.744 kb on - strand, within Atu8122 at 435.836 kb on + strand, within Atu8122 at 435.857 kb on + strand, within Atu8122
Per-strain Table
Position Strand Gene LocusTag Fraction Acetovanillone 5 mM remove 432,850 + Atu0436 0.86 +2.5 432,850 + Atu0436 0.86 +1.3 432,858 - Atu0436 0.86 +0.4 432,861 + Atu0436 0.87 +1.3 432,876 - Atu0436 0.87 +1.8 432,878 + Atu0436 0.87 +0.8 433,333 - Atu0437 0.27 +1.1 433,346 - Atu0437 0.29 +1.2 433,516 + Atu0437 0.54 +1.3 433,519 - Atu0437 0.54 +1.1 433,574 + Atu0437 0.62 +1.5 433,633 - Atu0437 0.71 +1.0 433,653 + Atu0437 0.74 +1.1 433,846 - +1.6 433,866 - +0.5 433,875 + +1.2 434,003 + Atu0438 0.17 +1.0 434,013 + Atu0438 0.18 +1.0 434,166 + Atu0438 0.33 +0.9 434,336 + Atu0438 0.49 +0.8 434,336 + Atu0438 0.49 +0.9 434,336 + Atu0438 0.49 +0.8 434,344 - Atu0438 0.50 +0.7 434,344 - Atu0438 0.50 +0.8 434,354 - Atu0438 0.51 +0.2 434,382 + Atu0438 0.54 +0.9 434,389 + Atu0438 0.54 +0.7 434,392 + Atu0438 0.55 +0.7 434,395 - Atu0438 0.55 +1.6 434,400 - Atu0438 0.55 +1.0 434,400 - Atu0438 0.55 +1.5 434,400 - Atu0438 0.55 +2.7 434,418 + Atu0438 0.57 +0.5 434,450 - Atu0438 0.60 +0.7 434,507 + Atu0438 0.66 -0.2 434,573 + Atu0438 0.72 +0.6 434,575 + Atu0438 0.72 +2.3 434,583 - Atu0438 0.73 +0.9 434,600 - Atu0438 0.75 +1.3 434,612 - Atu0438 0.76 +0.4 434,663 + Atu0438 0.81 +0.9 434,671 - Atu0438 0.82 +0.8 434,671 - Atu0438 0.82 +1.0 434,676 - Atu0438 0.82 +2.3 434,708 + Atu0438 0.85 +1.1 434,731 + Atu0438 0.87 +1.1 434,784 - +1.1 434,820 + +0.8 434,820 + +0.9 434,821 - +1.9 434,821 - +1.7 434,821 - +0.8 434,994 + +1.9 434,996 + +0.8 435,028 + +0.9 435,083 - +0.4 435,207 + +0.2 435,207 + +0.1 435,207 + +0.9 435,207 + +1.1 435,207 + +1.1 435,229 - +1.3 435,260 - Atu8122 0.13 +1.0 435,446 + Atu8122 0.34 +1.1 435,488 + Atu8122 0.38 +0.3 435,489 + Atu8122 0.38 +1.3 435,688 - Atu8122 0.60 +1.1 435,744 - Atu8122 0.66 +1.2 435,836 + Atu8122 0.77 +0.8 435,857 + Atu8122 0.79 +1.0
Or see this region's nucleotide sequence