Strain Fitness in Agrobacterium fabrum C58 around Atu0141

Experiment: Acetovanillone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0139 and Atu0140 overlap by 1 nucleotidesAtu0140 and Atu0141 are separated by 6 nucleotidesAtu0141 and Atu0142 are separated by 76 nucleotides Atu0139: Atu0139 - cytochrome o ubiquinol oxidase subunit IV, at 142,569 to 142,961 Atu0139 Atu0140: Atu0140 - cytochrome o ubiquinol oxidase subunit III, at 142,961 to 143,587 Atu0140 Atu0141: Atu0141 - cytochrome O ubiquinol oxidase subunit I, at 143,594 to 145,597 Atu0141 Atu0142: Atu0142 - cytochrome o ubiquinol oxidase subunit II, at 145,674 to 146,672 Atu0142 Position (kb) 143 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2at 143.083 kb on - strand, within Atu0140at 143.093 kb on - strand, within Atu0140at 143.227 kb on - strand, within Atu0140at 143.728 kb on - strandat 143.743 kb on - strandat 143.822 kb on + strand, within Atu0141at 143.971 kb on - strand, within Atu0141at 144.754 kb on - strand, within Atu0141at 145.458 kb on - strandat 145.492 kb on + strandat 145.808 kb on - strand, within Atu0142at 146.054 kb on + strand, within Atu0142at 146.179 kb on + strand, within Atu0142at 146.446 kb on + strand, within Atu0142

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetovanillone 5 mM
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143,083 - Atu0140 0.19 -0.5
143,093 - Atu0140 0.21 +0.4
143,227 - Atu0140 0.42 -0.1
143,728 - -1.1
143,743 - -0.7
143,822 + Atu0141 0.11 -1.0
143,971 - Atu0141 0.19 +2.2
144,754 - Atu0141 0.58 -0.7
145,458 - -0.8
145,492 + -1.5
145,808 - Atu0142 0.13 -1.0
146,054 + Atu0142 0.38 -2.1
146,179 + Atu0142 0.51 -1.7
146,446 + Atu0142 0.77 -1.3

Or see this region's nucleotide sequence