Experiment: carbon source Bisabolol 45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4108 and PP_4109 are separated by 3 nucleotides PP_4109 and PP_5658 are separated by 189 nucleotides PP_5658 and PP_4111 are separated by 73 nucleotides
PP_4108: PP_4108 - 2-aminoadipate transaminase (EC 2.6.1.39) <small>(from data)</small>, at 4,643,134 to 4,644,384
_4108
PP_4109: PP_4109 - conserved protein of unknown function, at 4,644,388 to 4,644,690
_4109
PP_5658: PP_5658 - protein of unknown function, at 4,644,880 to 4,645,362
_5658
PP_4111: PP_4111 - Elongation factor G 2, at 4,645,436 to 4,647,547
_4111
Position (kb) 4644
4645
4646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4643.999 kb on - strand, within PP_4108 at 4644.109 kb on + strand, within PP_4108 at 4644.110 kb on - strand, within PP_4108 at 4644.142 kb on + strand, within PP_4108 at 4644.142 kb on + strand, within PP_4108 at 4644.143 kb on - strand, within PP_4108 at 4644.389 kb on + strand at 4644.390 kb on - strand at 4644.482 kb on + strand, within PP_4109 at 4644.483 kb on - strand, within PP_4109 at 4644.483 kb on - strand, within PP_4109 at 4644.671 kb on + strand at 4644.671 kb on + strand at 4644.672 kb on - strand at 4644.672 kb on - strand at 4644.678 kb on - strand at 4644.678 kb on - strand at 4644.712 kb on + strand at 4644.712 kb on + strand at 4644.712 kb on + strand at 4644.712 kb on + strand at 4644.712 kb on + strand at 4644.712 kb on + strand at 4644.712 kb on + strand at 4644.713 kb on - strand at 4644.713 kb on - strand at 4644.713 kb on - strand at 4644.713 kb on - strand at 4644.714 kb on + strand at 4644.714 kb on + strand at 4644.715 kb on - strand at 4644.715 kb on - strand at 4644.730 kb on + strand at 4644.731 kb on - strand at 4644.731 kb on - strand at 4644.731 kb on - strand at 4644.895 kb on - strand at 4645.070 kb on + strand, within PP_5658 at 4645.071 kb on - strand, within PP_5658 at 4645.071 kb on - strand, within PP_5658 at 4645.093 kb on + strand, within PP_5658 at 4645.399 kb on - strand at 4645.427 kb on + strand at 4645.428 kb on - strand at 4645.428 kb on - strand at 4645.463 kb on + strand at 4645.464 kb on - strand at 4645.471 kb on + strand at 4645.471 kb on + strand at 4645.532 kb on + strand at 4645.532 kb on + strand at 4645.532 kb on + strand at 4645.533 kb on - strand at 4645.682 kb on + strand, within PP_4111 at 4645.682 kb on + strand, within PP_4111 at 4645.683 kb on - strand, within PP_4111 at 4645.835 kb on + strand, within PP_4111 at 4645.835 kb on + strand, within PP_4111 at 4645.835 kb on + strand, within PP_4111 at 4645.835 kb on + strand, within PP_4111 at 4645.836 kb on - strand, within PP_4111 at 4645.836 kb on - strand, within PP_4111 at 4645.836 kb on - strand, within PP_4111 at 4645.856 kb on + strand, within PP_4111 at 4645.856 kb on + strand, within PP_4111 at 4645.857 kb on - strand, within PP_4111 at 4646.012 kb on + strand, within PP_4111 at 4646.013 kb on - strand, within PP_4111 at 4646.013 kb on - strand, within PP_4111
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Bisabolol 45 mM remove 4,643,999 - PP_4108 0.69 +0.9 4,644,109 + PP_4108 0.78 +0.2 4,644,110 - PP_4108 0.78 +0.3 4,644,142 + PP_4108 0.81 +0.8 4,644,142 + PP_4108 0.81 +2.2 4,644,143 - PP_4108 0.81 +0.1 4,644,389 + +1.3 4,644,390 - -0.7 4,644,482 + PP_4109 0.31 -0.8 4,644,483 - PP_4109 0.31 -1.2 4,644,483 - PP_4109 0.31 +0.1 4,644,671 + +2.4 4,644,671 + -0.3 4,644,672 - +0.7 4,644,672 - -0.5 4,644,678 - +0.5 4,644,678 - +0.1 4,644,712 + -0.3 4,644,712 + +0.5 4,644,712 + -0.5 4,644,712 + -0.4 4,644,712 + +0.3 4,644,712 + +1.3 4,644,712 + -0.6 4,644,713 - -0.4 4,644,713 - -1.6 4,644,713 - -0.4 4,644,713 - +0.1 4,644,714 + -0.2 4,644,714 + -0.6 4,644,715 - +0.3 4,644,715 - +1.9 4,644,730 + -1.1 4,644,731 - -0.2 4,644,731 - +0.3 4,644,731 - -0.4 4,644,895 - -0.6 4,645,070 + PP_5658 0.39 -1.3 4,645,071 - PP_5658 0.40 -2.0 4,645,071 - PP_5658 0.40 -1.8 4,645,093 + PP_5658 0.44 +2.2 4,645,399 - +0.3 4,645,427 + +1.0 4,645,428 - +3.9 4,645,428 - -0.8 4,645,463 + +0.3 4,645,464 - -1.2 4,645,471 + +0.3 4,645,471 + +0.4 4,645,532 + -0.3 4,645,532 + -1.2 4,645,532 + +2.3 4,645,533 - +0.3 4,645,682 + PP_4111 0.12 -0.5 4,645,682 + PP_4111 0.12 +1.9 4,645,683 - PP_4111 0.12 -1.8 4,645,835 + PP_4111 0.19 +0.3 4,645,835 + PP_4111 0.19 -1.3 4,645,835 + PP_4111 0.19 -0.2 4,645,835 + PP_4111 0.19 -1.1 4,645,836 - PP_4111 0.19 +2.6 4,645,836 - PP_4111 0.19 -0.3 4,645,836 - PP_4111 0.19 -0.8 4,645,856 + PP_4111 0.20 -1.7 4,645,856 + PP_4111 0.20 -1.2 4,645,857 - PP_4111 0.20 +0.3 4,646,012 + PP_4111 0.27 -4.1 4,646,013 - PP_4111 0.27 -0.1 4,646,013 - PP_4111 0.27 +3.5
Or see this region's nucleotide sequence