Strain Fitness in Pseudomonas putida KT2440 around PP_1801

Experiment: carbon source Bisabolol 45 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source Bisabolol 45 mM
2,022,891	+				-0.0
2,022,891	+				-1.3
2,022,891	+				+1.4
2,022,892	-				+0.4
2,022,918	+				-1.5
2,022,919	-				-0.8
2,022,980	+				+0.4
2,023,026	+				-1.4
2,023,056	+				-0.1
2,023,102	-		PP_1800	0.15	-1.5
2,023,168	+		PP_1800	0.22	-1.6
2,023,168	+		PP_1800	0.22	-3.3
2,023,169	-		PP_1800	0.22	-1.9
2,023,169	-		PP_1800	0.22	-0.8
2,023,169	-		PP_1800	0.22	-1.5
2,023,224	+		PP_1800	0.28	-2.2
2,023,225	-		PP_1800	0.29	-1.3
2,023,225	-		PP_1800	0.29	-1.2
2,023,225	-		PP_1800	0.29	+0.8
2,023,241	-		PP_1800	0.30	-1.5
2,023,241	-		PP_1800	0.30	-0.7
2,023,323	+		PP_1800	0.39	+0.4
2,023,324	-		PP_1800	0.40	+1.4
2,023,324	-		PP_1800	0.40	-2.3
2,023,324	-		PP_1800	0.40	-2.7
2,023,384	-		PP_1800	0.46	-0.7
2,023,410	+		PP_1800	0.49	-1.1
2,023,410	+		PP_1800	0.49	-2.3
2,023,410	+		PP_1800	0.49	-2.5
2,023,411	-		PP_1800	0.49	-1.1
2,023,411	-		PP_1800	0.49	+0.1
2,023,443	-		PP_1800	0.53	-2.1
2,023,467	+		PP_1800	0.56	+0.9
2,023,468	-		PP_1800	0.56	-0.7
2,023,559	-		PP_1800	0.66	-0.6
2,023,559	-				-1.6
2,023,564	+				+1.4
2,023,564	+		PP_1800	0.66	-3.1
2,023,565	-		PP_1800	0.66	-0.1
2,023,565	-		PP_1800	0.66	-1.1
2,023,585	+		PP_1800	0.69	-0.2
2,023,585	+				-1.2
2,023,585	+		PP_1800	0.69	+0.4
2,023,585	+		PP_1800	0.69	+0.1
2,023,585	+		PP_1800	0.69	+0.6
2,023,586	-		PP_1800	0.69	-1.2
2,023,586	-		PP_1800	0.69	-3.6
2,023,586	-		PP_1800	0.69	-1.7
2,023,586	-		PP_1800	0.69	-0.3
2,023,643	-		PP_1800	0.75	+1.9
2,023,782	-				-3.3
2,023,817	+				-0.2
2,023,818	-				-1.6
2,023,818	-				-1.0
2,023,865	+				-0.6
2,023,919	+				-0.9
2,023,919	+				+0.6
2,023,919	+				-2.2
2,023,920	-				-2.1
2,023,925	+				-1.2
2,023,925	+				-1.5
2,023,926	-				+1.4
2,023,926	-				-1.7
2,023,926	-				-0.1
2,023,926	-				-2.0
2,023,978	-		PP_1801	0.10	+0.1
2,023,978	-		PP_1801	0.10	-0.2
2,023,978	-		PP_1801	0.10	-1.6
2,023,978	-		PP_1801	0.10	-2.0
2,024,087	+		PP_1801	0.20	-1.5
2,024,147	+		PP_1801	0.25	-2.1
2,024,147	+		PP_1801	0.25	-1.0
2,024,147	+		PP_1801	0.25	-1.9
2,024,148	-		PP_1801	0.25	-1.7
2,024,148	-		PP_1801	0.25	-1.5
2,024,166	-		PP_1801	0.27	+0.4
2,024,259	-		PP_1801	0.35	-0.0
2,024,345	+		PP_1801	0.42	-2.1
2,024,460	+		PP_1801	0.52	-1.0
2,024,468	+		PP_1801	0.53	-0.2
2,024,468	+		PP_1801	0.53	-2.3
2,024,469	-		PP_1801	0.53	-2.4
2,024,469	-		PP_1801	0.53	-1.6
2,024,521	+		PP_1801	0.58	-1.4
2,024,521	+		PP_1801	0.58	-1.1
2,024,521	+		PP_1801	0.58	-1.2
2,024,522	-		PP_1801	0.58	+0.3
2,024,582	+		PP_1801	0.63	-2.0
2,024,727	-		PP_1801	0.76	-1.4
2,024,727	-		PP_1801	0.76	-1.2
2,024,781	+		PP_1801	0.80	-1.0
2,024,781	+		PP_1801	0.80	-1.3
2,024,782	-		PP_1801	0.80	-3.0
2,024,782	-		PP_1801	0.80	-0.4
2,024,782	-		PP_1801	0.80	-1.6
2,024,782	-		PP_1801	0.80	-0.8
2,024,782	-		PP_1801	0.80	-1.0
2,024,811	+		PP_1801	0.83	-1.1
2,024,850	+		PP_1801	0.86	-2.0
2,024,850	+		PP_1801	0.86	-0.6
2,024,850	+		PP_1801	0.86	-2.2
2,024,850	+		PP_1801	0.86	-1.2
2,024,851	-		PP_1801	0.87	-0.7
2,024,851	-		PP_1801	0.87	-1.0
2,024,851	-		PP_1801	0.87	-0.9
2,024,851	-		PP_1801	0.87	-2.8
2,024,981	+				+1.4
2,024,981	+				-3.0
2,024,981	+				-1.1
2,024,981	+				-2.1
2,024,981	+				-1.6
2,025,031	+				-1.7
2,025,031	+				-0.0
2,025,119	+		PP_1802	0.11	-1.6
2,025,119	+		PP_1802	0.11	-1.7
2,025,119	+		PP_1802	0.11	+1.1
2,025,119	+		PP_1802	0.11	+1.4
2,025,120	-		PP_1802	0.11	-0.8
2,025,120	-		PP_1802	0.11	-1.2
2,025,120	-		PP_1802	0.11	+2.2
2,025,120	-		PP_1802	0.11	+2.4
2,025,120	-		PP_1802	0.11	-0.6
2,025,120	-		PP_1802	0.11	-1.2
2,025,120	-		PP_1802	0.11	-1.4
2,025,120	-		PP_1802	0.11	+2.0
2,025,121	+		PP_1802	0.11	-0.2
2,025,122	-		PP_1802	0.11	-1.6
2,025,122	-		PP_1802	0.11	-0.8
2,025,122	-		PP_1802	0.11	-0.9
2,025,122	-		PP_1802	0.11	-0.7
2,025,122	-		PP_1802	0.11	-0.5
2,025,275	-		PP_1802	0.25	-2.4
2,025,292	+		PP_1802	0.26	-1.0
2,025,292	+		PP_1802	0.26	-1.2
2,025,292	+		PP_1802	0.26	-0.0
2,025,292	+		PP_1802	0.26	-0.4
2,025,292	+		PP_1802	0.26	+0.4
2,025,292	+		PP_1802	0.26	-2.6
2,025,292	+		PP_1802	0.26	-0.7
2,025,292	+				-1.8
2,025,293	-		PP_1802	0.26	+1.8
2,025,293	-		PP_1802	0.26	-1.9
2,025,293	-		PP_1802	0.26	-2.0
2,025,293	-		PP_1802	0.26	-1.8
2,025,293	-		PP_1802	0.26	-1.4
2,025,346	+		PP_1802	0.31	-2.5
2,025,347	-		PP_1802	0.31	-1.7
2,025,347	-		PP_1802	0.31	-0.9
2,025,347	-		PP_1802	0.31	-0.9
2,025,347	-		PP_1802	0.31	-0.8
2,025,347	-		PP_1802	0.31	-1.7
2,025,347	-		PP_1802	0.31	-1.4
2,025,388	+		PP_1802	0.35	-1.2
2,025,389	-		PP_1802	0.35	-1.8
2,025,389	-		PP_1802	0.35	-1.5
2,025,389	-		PP_1802	0.35	-1.6
2,025,389	-		PP_1802	0.35	-1.2
2,025,429	+		PP_1802	0.39	-2.5
2,025,430	-		PP_1802	0.39	-1.7
2,025,430	-		PP_1802	0.39	-0.9
2,025,451	+		PP_1802	0.41	-1.3
2,025,451	+		PP_1802	0.41	-1.0
2,025,452	-		PP_1802	0.41	-0.8
2,025,452	-		PP_1802	0.41	-1.8
2,025,452	-		PP_1802	0.41	-1.4
2,025,452	-		PP_1802	0.41	-0.7
2,025,452	-		PP_1802	0.41	-0.1
2,025,452	-		PP_1802	0.41	-1.4
2,025,452	-		PP_1802	0.41	-1.1
2,025,529	+		PP_1802	0.48	-2.0
2,025,529	+		PP_1802	0.48	-2.4
2,025,529	+		PP_1802	0.48	-2.1
2,025,530	-		PP_1802	0.48	-1.8
2,025,530	-		PP_1802	0.48	-2.1
2,025,545	+		PP_1802	0.49	-1.7
2,025,545	+		PP_1802	0.49	+0.5
2,025,599	+		PP_1802	0.54	-2.5
2,025,613	+		PP_1802	0.55	-2.4
2,025,616	+		PP_1802	0.55	-1.6
2,025,616	+		PP_1802	0.55	+0.4
2,025,616	+		PP_1802	0.55	-0.2
2,025,617	-		PP_1802	0.55	-0.7
2,025,617	-		PP_1802	0.55	-1.9
2,025,617	-		PP_1802	0.55	-0.6
2,025,617	-		PP_1802	0.55	-1.4
2,025,632	-		PP_1802	0.57	-2.2
2,025,639	-		PP_1802	0.57	-0.6
2,025,639	-		PP_1802	0.57	-2.3
2,025,651	+		PP_1802	0.59	-3.0
2,025,796	+		PP_1802	0.72	-1.2
2,025,796	+		PP_1802	0.72	-2.4
2,025,797	-		PP_1802	0.72	-1.2
2,025,806	+		PP_1802	0.73	-3.7
2,025,807	-		PP_1802	0.73	-2.4
2,025,807	-		PP_1802	0.73	-1.4
2,025,807	-		PP_1802	0.73	-1.6
2,025,865	+		PP_1802	0.78	-2.4
2,025,865	+		PP_1802	0.78	-0.5
2,025,865	+		PP_1802	0.78	-2.3
2,025,910	+		PP_1802	0.82	-3.3