Experiment: carbon source Bisabolol 45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0115 and PP_0116 are separated by 60 nucleotides PP_0116 and PP_0117 are separated by 126 nucleotides PP_0117 and PP_0118 overlap by 8 nucleotides PP_0118 and PP_0119 overlap by 4 nucleotides
PP_0115: PP_0115 - hydroperoxidase - self catalytic heme d synthase, at 120,055 to 122,190
_0115
PP_0116: PP_0116 - putative lipoprotein, at 122,251 to 122,958
_0116
PP_0117: PP_0117 - Zn(2+) ABC transporter - permease subunit, at 123,085 to 123,867
_0117
PP_0118: PP_0118 - zinc import ATP-binding protein, at 123,860 to 124,633
_0118
PP_0119: PP_0119 - putative zinc uptake regulation protein ZUR, at 124,630 to 125,115
_0119
Position (kb) 123
124 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 122.225 kb on + strand at 122.225 kb on + strand at 122.225 kb on + strand at 122.237 kb on + strand at 122.252 kb on + strand at 122.253 kb on - strand at 122.404 kb on + strand, within PP_0116 at 122.421 kb on - strand, within PP_0116 at 122.421 kb on - strand, within PP_0116 at 122.499 kb on + strand, within PP_0116 at 122.500 kb on - strand, within PP_0116 at 122.707 kb on - strand, within PP_0116 at 122.707 kb on - strand, within PP_0116 at 122.717 kb on + strand, within PP_0116 at 122.718 kb on - strand, within PP_0116 at 122.718 kb on - strand, within PP_0116 at 122.718 kb on - strand, within PP_0116 at 122.741 kb on + strand, within PP_0116 at 122.741 kb on + strand, within PP_0116 at 122.973 kb on - strand at 122.997 kb on + strand at 122.998 kb on - strand at 122.998 kb on - strand at 123.030 kb on + strand at 123.030 kb on + strand at 123.031 kb on - strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.119 kb on - strand at 123.119 kb on - strand at 123.291 kb on + strand, within PP_0117 at 123.292 kb on - strand, within PP_0117 at 123.331 kb on + strand, within PP_0117 at 123.331 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.527 kb on + strand, within PP_0117 at 123.528 kb on - strand, within PP_0117 at 123.528 kb on - strand, within PP_0117 at 123.788 kb on - strand, within PP_0117 at 123.788 kb on - strand, within PP_0117 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.951 kb on + strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 123.952 kb on - strand, within PP_0118 at 124.152 kb on + strand, within PP_0118 at 124.152 kb on + strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.153 kb on - strand, within PP_0118 at 124.187 kb on + strand, within PP_0118 at 124.187 kb on + strand, within PP_0118 at 124.188 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.343 kb on + strand, within PP_0118 at 124.344 kb on - strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.420 kb on - strand, within PP_0118 at 124.448 kb on + strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.650 kb on + strand at 124.651 kb on - strand at 124.853 kb on - strand, within PP_0119
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Bisabolol 45 mM remove 122,225 + -1.1 122,225 + +0.2 122,225 + -0.7 122,237 + -0.6 122,252 + -1.2 122,253 - +1.3 122,404 + PP_0116 0.22 +3.4 122,421 - PP_0116 0.24 +0.5 122,421 - PP_0116 0.24 +0.7 122,499 + PP_0116 0.35 -0.3 122,500 - PP_0116 0.35 -1.1 122,707 - PP_0116 0.64 +1.3 122,707 - PP_0116 0.64 -0.9 122,717 + PP_0116 0.66 +1.7 122,718 - PP_0116 0.66 -0.2 122,718 - PP_0116 0.66 -2.0 122,718 - PP_0116 0.66 -0.2 122,741 + PP_0116 0.69 -0.2 122,741 + PP_0116 0.69 -2.5 122,973 - -0.4 122,997 + -0.2 122,998 - -2.3 122,998 - +2.2 123,030 + +1.8 123,030 + +2.0 123,031 - -1.5 123,118 + -1.7 123,118 + -2.7 123,119 - -1.7 123,119 - -0.6 123,291 + PP_0117 0.26 -4.1 123,292 - PP_0117 0.26 -4.0 123,331 + PP_0117 0.31 -1.7 123,331 + PP_0117 0.31 -4.4 123,527 + PP_0117 0.56 -3.7 123,527 + PP_0117 0.56 -2.9 123,527 + PP_0117 0.56 -1.1 123,527 + PP_0117 0.56 -3.2 123,527 + PP_0117 0.56 -3.0 123,528 - PP_0117 0.57 -3.3 123,528 - PP_0117 0.57 -1.3 123,788 - PP_0117 0.90 +0.3 123,788 - PP_0117 0.90 -2.7 123,951 + PP_0118 0.12 -1.2 123,951 + PP_0118 0.12 -1.8 123,951 + PP_0118 0.12 -0.1 123,951 + PP_0118 0.12 +1.9 123,952 - PP_0118 0.12 -1.2 123,952 - PP_0118 0.12 +2.0 123,952 - PP_0118 0.12 +1.3 123,952 - PP_0118 0.12 +0.3 123,952 - PP_0118 0.12 +0.5 124,152 + PP_0118 0.38 -2.3 124,152 + PP_0118 0.38 -3.8 124,153 - PP_0118 0.38 -3.4 124,153 - PP_0118 0.38 -3.5 124,153 - PP_0118 0.38 -1.3 124,187 + PP_0118 0.42 -3.6 124,187 + PP_0118 0.42 -3.7 124,188 - PP_0118 0.42 +0.3 124,271 - PP_0118 0.53 -4.3 124,271 - PP_0118 0.53 -1.4 124,343 + PP_0118 0.62 -2.3 124,344 - PP_0118 0.63 -3.0 124,419 + PP_0118 0.72 +0.3 124,419 + PP_0118 0.72 -1.5 124,419 + PP_0118 0.72 -2.7 124,420 - PP_0118 0.72 -3.2 124,448 + PP_0118 0.76 -2.1 124,482 - PP_0118 0.80 -1.0 124,482 - PP_0118 0.80 -4.5 124,650 + -3.4 124,651 - -0.3 124,853 - PP_0119 0.46 -1.2
Or see this region's nucleotide sequence