Strain Fitness in Pseudomonas putida KT2440 around PP_0082

Experiment: carbon source Bisabolol 45 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0080 and PP_0081 are separated by 13 nucleotidesPP_0081 and PP_0082 are separated by 120 nucleotidesPP_0082 and PP_0083 overlap by 4 nucleotides PP_0080: PP_0080 - conserved protein of unknown function, at 90,447 to 91,064 _0080 PP_0081: PP_0081 - conserved protein of unknown function, at 91,078 to 91,449 _0081 PP_0082: PP_0082 - tryptophan synthase alpha chain, at 91,570 to 92,379 _0082 PP_0083: PP_0083 - tryptophan synthase beta chain, at 92,376 to 93,593 _0083 Position (kb) 91 92 93Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 90.573 kb on - strand, within PP_0080at 90.595 kb on - strand, within PP_0080at 90.697 kb on + strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.750 kb on + strand, within PP_0080at 90.750 kb on + strand, within PP_0080at 90.751 kb on - strand, within PP_0080at 90.751 kb on - strand, within PP_0080at 90.753 kb on - strand, within PP_0080at 90.753 kb on - strand, within PP_0080at 90.831 kb on + strand, within PP_0080at 91.113 kb on + strandat 91.114 kb on - strandat 91.136 kb on - strand, within PP_0081at 91.150 kb on + strand, within PP_0081at 91.151 kb on - strand, within PP_0081at 91.151 kb on - strand, within PP_0081at 91.153 kb on + strand, within PP_0081at 91.154 kb on - strand, within PP_0081at 91.346 kb on + strand, within PP_0081at 91.347 kb on - strand, within PP_0081at 91.347 kb on - strand, within PP_0081at 91.347 kb on - strand, within PP_0081at 91.347 kb on - strand, within PP_0081at 91.447 kb on + strandat 91.447 kb on + strandat 91.448 kb on - strandat 91.494 kb on + strandat 91.535 kb on - strandat 91.547 kb on - strandat 91.621 kb on + strandat 91.622 kb on - strandat 91.853 kb on + strand, within PP_0082at 91.853 kb on + strand, within PP_0082at 91.853 kb on + strand, within PP_0082at 91.854 kb on - strand, within PP_0082at 91.856 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.072 kb on + strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.073 kb on - strand, within PP_0082at 92.075 kb on + strand, within PP_0082at 92.423 kb on + strandat 92.424 kb on - strandat 92.424 kb on - strandat 92.599 kb on + strand, within PP_0083at 92.599 kb on + strand, within PP_0083at 92.626 kb on + strand, within PP_0083at 92.627 kb on - strand, within PP_0083at 92.716 kb on + strand, within PP_0083at 92.717 kb on - strand, within PP_0083at 92.717 kb on - strand, within PP_0083at 92.717 kb on - strand, within PP_0083at 92.717 kb on - strand, within PP_0083at 92.745 kb on + strand, within PP_0083at 92.785 kb on - strand, within PP_0083at 92.785 kb on - strand, within PP_0083at 93.013 kb on + strand, within PP_0083at 93.014 kb on - strand, within PP_0083at 93.014 kb on - strand, within PP_0083at 93.172 kb on + strand, within PP_0083at 93.172 kb on + strand, within PP_0083at 93.173 kb on - strand, within PP_0083at 93.173 kb on - strand, within PP_0083at 93.173 kb on - strand, within PP_0083

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Bisabolol 45 mM
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90,573 - PP_0080 0.20 +2.4
90,595 - PP_0080 0.24 -0.4
90,697 + PP_0080 0.40 +3.5
90,698 - PP_0080 0.41 +0.6
90,698 - PP_0080 0.41 -0.7
90,698 - PP_0080 0.41 -0.8
90,750 + PP_0080 0.49 +1.6
90,750 + PP_0080 0.49 -0.4
90,751 - PP_0080 0.49 +2.3
90,751 - PP_0080 0.49 -1.2
90,753 - PP_0080 0.50 +0.9
90,753 - PP_0080 0.50 +1.3
90,831 + PP_0080 0.62 +0.6
91,113 + +0.3
91,114 - -1.7
91,136 - PP_0081 0.16 -1.0
91,150 + PP_0081 0.19 -1.5
91,151 - PP_0081 0.20 -1.2
91,151 - PP_0081 0.20 -1.8
91,153 + PP_0081 0.20 +3.1
91,154 - PP_0081 0.20 +0.3
91,346 + PP_0081 0.72 -2.8
91,347 - PP_0081 0.72 -1.2
91,347 - PP_0081 0.72 -0.8
91,347 - PP_0081 0.72 -0.8
91,347 - PP_0081 0.72 +1.5
91,447 + -1.8
91,447 + -1.0
91,448 - -0.9
91,494 + +0.1
91,535 - +1.4
91,547 - +1.6
91,621 + -3.4
91,622 - -2.3
91,853 + PP_0082 0.35 +0.3
91,853 + PP_0082 0.35 +0.3
91,853 + PP_0082 0.35 -3.4
91,854 - PP_0082 0.35 +0.3
91,856 + PP_0082 0.35 -3.0
92,072 + PP_0082 0.62 +0.3
92,072 + PP_0082 0.62 -2.7
92,072 + PP_0082 0.62 -3.4
92,072 + PP_0082 0.62 -3.8
92,072 + PP_0082 0.62 -3.4
92,073 - PP_0082 0.62 -2.3
92,073 - PP_0082 0.62 -3.0
92,073 - PP_0082 0.62 -2.5
92,073 - PP_0082 0.62 +0.3
92,073 - PP_0082 0.62 -2.0
92,073 - PP_0082 0.62 +0.3
92,073 - PP_0082 0.62 +0.3
92,073 - PP_0082 0.62 +0.3
92,075 + PP_0082 0.62 +0.3
92,423 + +0.3
92,424 - -1.1
92,424 - -0.7
92,599 + PP_0083 0.18 +0.3
92,599 + PP_0083 0.18 +0.3
92,626 + PP_0083 0.21 +0.3
92,627 - PP_0083 0.21 +0.3
92,716 + PP_0083 0.28 +0.3
92,717 - PP_0083 0.28 -3.2
92,717 - PP_0083 0.28 -0.7
92,717 - PP_0083 0.28 +0.3
92,717 - PP_0083 0.28 -3.9
92,745 + PP_0083 0.30 +0.3
92,785 - PP_0083 0.34 -2.3
92,785 - PP_0083 0.34 +0.3
93,013 + PP_0083 0.52 -2.3
93,014 - PP_0083 0.52 -3.2
93,014 - PP_0083 0.52 -2.3
93,172 + PP_0083 0.65 +0.3
93,172 + PP_0083 0.65 -2.5
93,173 - PP_0083 0.65 +0.3
93,173 - PP_0083 0.65 +0.3
93,173 - PP_0083 0.65 -1.7

Or see this region's nucleotide sequence