Strain Fitness in Agrobacterium fabrum C58 around Atu5441

Experiment: Rosmarinic 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu8060 and Atu5440 are separated by 28 nucleotidesAtu5440 and Atu5441 are separated by 266 nucleotidesAtu5441 and Atu5442 are separated by 177 nucleotides Atu8060: Atu8060 - hypothetical protein, at 433,051 to 433,362 Atu8060 Atu5440: Atu5440 - hypothetical protein, at 433,391 to 433,621 Atu5440 Atu5441: Atu5441 - ABC transporter substrate binding protein, at 433,888 to 434,406 Atu5441 Atu5442: Atu5442 - methyl-accepting chemotaxis protein, at 434,584 to 436,524 Atu5442 Position (kb) 433 434 435Strain fitness (log2 ratio) -2 -1 0 1at 432.914 kb on + strandat 432.926 kb on + strandat 432.928 kb on - strandat 432.999 kb on - strandat 433.022 kb on + strandat 433.154 kb on + strand, within Atu8060at 433.154 kb on + strand, within Atu8060at 433.162 kb on - strand, within Atu8060at 433.162 kb on - strand, within Atu8060at 433.167 kb on - strand, within Atu8060at 433.170 kb on + strand, within Atu8060at 433.176 kb on + strand, within Atu8060at 433.181 kb on + strand, within Atu8060at 433.204 kb on - strand, within Atu8060at 433.248 kb on + strand, within Atu8060at 433.248 kb on + strand, within Atu8060at 433.248 kb on + strand, within Atu8060at 433.256 kb on - strand, within Atu8060at 433.256 kb on - strand, within Atu8060at 433.256 kb on - strand, within Atu8060at 433.256 kb on - strand, within Atu8060at 433.263 kb on + strand, within Atu8060at 433.263 kb on + strand, within Atu8060at 433.320 kb on + strand, within Atu8060at 433.377 kb on - strandat 433.397 kb on - strandat 433.402 kb on + strandat 433.410 kb on - strandat 433.425 kb on + strand, within Atu5440at 433.443 kb on - strand, within Atu5440at 433.444 kb on + strand, within Atu5440at 433.507 kb on + strand, within Atu5440at 433.515 kb on - strand, within Atu5440at 433.515 kb on - strand, within Atu5440at 433.520 kb on - strand, within Atu5440at 433.538 kb on + strand, within Atu5440at 433.539 kb on - strand, within Atu5440at 433.539 kb on - strand, within Atu5440at 433.571 kb on - strand, within Atu5440at 433.594 kb on - strand, within Atu5440at 433.667 kb on - strandat 433.749 kb on - strandat 433.806 kb on + strandat 433.806 kb on - strandat 433.863 kb on - strandat 433.885 kb on - strandat 433.886 kb on + strandat 433.934 kb on + strandat 433.934 kb on + strandat 433.942 kb on - strand, within Atu5441at 433.982 kb on - strand, within Atu5441at 434.023 kb on + strand, within Atu5441at 434.023 kb on + strand, within Atu5441at 434.025 kb on + strand, within Atu5441at 434.031 kb on - strand, within Atu5441at 434.031 kb on - strand, within Atu5441at 434.111 kb on - strand, within Atu5441at 434.131 kb on + strand, within Atu5441at 434.139 kb on - strand, within Atu5441at 434.161 kb on + strand, within Atu5441at 434.184 kb on + strand, within Atu5441at 434.192 kb on - strand, within Atu5441at 434.230 kb on + strand, within Atu5441at 434.273 kb on + strand, within Atu5441at 434.313 kb on - strand, within Atu5441at 434.407 kb on - strandat 434.774 kb on - strandat 434.789 kb on - strand, within Atu5442at 434.822 kb on - strand, within Atu5442at 434.850 kb on - strand, within Atu5442at 434.900 kb on - strand, within Atu5442at 434.975 kb on + strand, within Atu5442at 434.983 kb on - strand, within Atu5442at 435.000 kb on + strand, within Atu5442at 435.000 kb on + strand, within Atu5442at 435.008 kb on - strand, within Atu5442at 435.008 kb on - strand, within Atu5442at 435.008 kb on - strand, within Atu5442at 435.078 kb on + strand, within Atu5442at 435.087 kb on - strand, within Atu5442at 435.090 kb on + strand, within Atu5442at 435.096 kb on + strand, within Atu5442at 435.147 kb on + strand, within Atu5442at 435.155 kb on - strand, within Atu5442at 435.165 kb on + strand, within Atu5442at 435.173 kb on - strand, within Atu5442at 435.175 kb on + strand, within Atu5442at 435.221 kb on + strand, within Atu5442at 435.259 kb on + strand, within Atu5442at 435.274 kb on + strand, within Atu5442at 435.277 kb on - strand, within Atu5442at 435.277 kb on - strand, within Atu5442at 435.282 kb on - strand, within Atu5442at 435.340 kb on + strand, within Atu5442at 435.360 kb on - strand, within Atu5442at 435.384 kb on + strand, within Atu5442

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rosmarinic 5 mM
remove
432,914 + -0.4
432,926 + +0.3
432,928 - -0.2
432,999 - -0.1
433,022 + -0.3
433,154 + Atu8060 0.33 -0.5
433,154 + Atu8060 0.33 -0.6
433,162 - Atu8060 0.36 -0.4
433,162 - Atu8060 0.36 -0.1
433,167 - Atu8060 0.37 +0.1
433,170 + Atu8060 0.38 +0.1
433,176 + Atu8060 0.40 +0.0
433,181 + Atu8060 0.42 -0.0
433,204 - Atu8060 0.49 -0.0
433,248 + Atu8060 0.63 +0.1
433,248 + Atu8060 0.63 +0.3
433,248 + Atu8060 0.63 +1.4
433,256 - Atu8060 0.66 +0.2
433,256 - Atu8060 0.66 -0.2
433,256 - Atu8060 0.66 -1.3
433,256 - Atu8060 0.66 -0.1
433,263 + Atu8060 0.68 -0.0
433,263 + Atu8060 0.68 -0.1
433,320 + Atu8060 0.86 +0.4
433,377 - -0.3
433,397 - -0.2
433,402 + -0.2
433,410 - -0.2
433,425 + Atu5440 0.15 -0.5
433,443 - Atu5440 0.23 -0.3
433,444 + Atu5440 0.23 -1.2
433,507 + Atu5440 0.50 +0.8
433,515 - Atu5440 0.54 +0.2
433,515 - Atu5440 0.54 -0.5
433,520 - Atu5440 0.56 +0.0
433,538 + Atu5440 0.64 +0.1
433,539 - Atu5440 0.64 +0.4
433,539 - Atu5440 0.64 +0.2
433,571 - Atu5440 0.78 -2.6
433,594 - Atu5440 0.88 +0.2
433,667 - -0.6
433,749 - +0.7
433,806 + -1.1
433,806 - +0.4
433,863 - -0.5
433,885 - +0.0
433,886 + +0.4
433,934 + -0.0
433,934 + -0.1
433,942 - Atu5441 0.10 +0.3
433,982 - Atu5441 0.18 +0.3
434,023 + Atu5441 0.26 +0.4
434,023 + Atu5441 0.26 +0.4
434,025 + Atu5441 0.26 -0.2
434,031 - Atu5441 0.28 -0.4
434,031 - Atu5441 0.28 +0.6
434,111 - Atu5441 0.43 +0.1
434,131 + Atu5441 0.47 +0.5
434,139 - Atu5441 0.48 +0.6
434,161 + Atu5441 0.53 +0.2
434,184 + Atu5441 0.57 +0.3
434,192 - Atu5441 0.59 +0.4
434,230 + Atu5441 0.66 -0.2
434,273 + Atu5441 0.74 +0.2
434,313 - Atu5441 0.82 +0.7
434,407 - +0.8
434,774 - +0.6
434,789 - Atu5442 0.11 -0.7
434,822 - Atu5442 0.12 +0.1
434,850 - Atu5442 0.14 +0.3
434,900 - Atu5442 0.16 +0.4
434,975 + Atu5442 0.20 -0.1
434,983 - Atu5442 0.21 +0.0
435,000 + Atu5442 0.21 -0.1
435,000 + Atu5442 0.21 -1.4
435,008 - Atu5442 0.22 -0.1
435,008 - Atu5442 0.22 -0.1
435,008 - Atu5442 0.22 +0.7
435,078 + Atu5442 0.25 -0.2
435,087 - Atu5442 0.26 +0.6
435,090 + Atu5442 0.26 -0.3
435,096 + Atu5442 0.26 -0.1
435,147 + Atu5442 0.29 -0.2
435,155 - Atu5442 0.29 +0.5
435,165 + Atu5442 0.30 +0.1
435,173 - Atu5442 0.30 -0.4
435,175 + Atu5442 0.30 -0.1
435,221 + Atu5442 0.33 +0.3
435,259 + Atu5442 0.35 -0.1
435,274 + Atu5442 0.36 -0.1
435,277 - Atu5442 0.36 +0.4
435,277 - Atu5442 0.36 -0.3
435,282 - Atu5442 0.36 +0.5
435,340 + Atu5442 0.39 -0.0
435,360 - Atu5442 0.40 -0.2
435,384 + Atu5442 0.41 -0.3

Or see this region's nucleotide sequence