Strain Fitness in Agrobacterium fabrum C58 around Atu3773
Experiment: Rosmarinic 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Rosmarinic 5 mM |
|---|---|---|---|---|---|
| remove | |||||
| 855,915 | + | -0.5 | |||
| 855,923 | - | +0.0 | |||
| 855,923 | - | -0.1 | |||
| 855,933 | + | +0.1 | |||
| 855,949 | + | Atu3772 | 0.10 | -0.7 | |
| 856,040 | + | Atu3772 | 0.19 | -0.3 | |
| 856,285 | + | Atu3772 | 0.42 | -0.3 | |
| 856,359 | - | Atu3772 | 0.49 | -0.3 | |
| 856,391 | - | Atu3772 | 0.52 | +1.5 | |
| 856,513 | - | Atu3772 | 0.64 | +0.5 | |
| 856,565 | + | Atu3772 | 0.69 | -0.3 | |
| 856,608 | - | Atu3772 | 0.73 | -0.1 | |
| 856,614 | - | Atu3772 | 0.74 | -0.1 | |
| 856,700 | + | Atu3772 | 0.82 | +1.5 | |
| 856,772 | - | Atu3772 | 0.89 | -0.1 | |
| 856,779 | - | Atu3772 | 0.89 | +0.1 | |
| 856,790 | + | -0.4 | |||
| 856,834 | - | -0.2 | |||
| 856,923 | + | -0.0 | |||
| 856,931 | - | -0.7 | |||
| 856,968 | - | Atu3773 | 0.16 | -0.5 | |
| 857,245 | + | Atu3773 | 0.76 | -0.7 | |
| 857,257 | - | Atu3773 | 0.78 | -0.7 | |
| 857,288 | - | Atu3773 | 0.85 | +0.1 | |
| 857,366 | - | -0.2 | |||
| 857,366 | - | +0.0 | |||
| 857,428 | + | +0.3 |
Or see this region's nucleotide sequence