Experiment: Rosmarinic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3608 and Atu3609 are separated by 114 nucleotides Atu3609 and Atu3610 overlap by 28 nucleotides Atu3610 and Atu8095 are separated by 49 nucleotides
Atu3608: Atu3608 - hypothetical protein, at 663,235 to 663,966
Atu3608
Atu3609: Atu3609 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 664,081 to 664,878
Atu3609
Atu3610: Atu3610 - transporter, at 664,851 to 665,402
Atu3610
Atu8095: Atu8095 - hypothetical protein, at 665,452 to 666,453
Atu8095
Position (kb) 664
665
666 Strain fitness (log2 ratio) -1
0
1
2 at 663.912 kb on + strand at 663.920 kb on - strand at 663.923 kb on + strand at 664.011 kb on + strand at 664.312 kb on + strand, within Atu3609 at 664.331 kb on + strand, within Atu3609 at 664.331 kb on + strand, within Atu3609 at 664.339 kb on - strand, within Atu3609 at 664.386 kb on + strand, within Atu3609 at 664.423 kb on - strand, within Atu3609 at 664.433 kb on - strand, within Atu3609 at 664.649 kb on - strand, within Atu3609 at 664.665 kb on + strand, within Atu3609 at 664.673 kb on - strand, within Atu3609 at 664.957 kb on + strand, within Atu3610 at 664.965 kb on - strand, within Atu3610 at 664.995 kb on + strand, within Atu3610 at 665.104 kb on - strand, within Atu3610 at 665.150 kb on - strand, within Atu3610 at 665.219 kb on + strand, within Atu3610 at 665.300 kb on - strand, within Atu3610 at 665.423 kb on + strand at 665.467 kb on - strand at 665.544 kb on + strand at 665.575 kb on + strand, within Atu8095 at 665.862 kb on + strand, within Atu8095 at 665.870 kb on - strand, within Atu8095 at 665.900 kb on + strand, within Atu8095 at 665.940 kb on - strand, within Atu8095 at 666.117 kb on - strand, within Atu8095 at 666.117 kb on - strand, within Atu8095 at 666.191 kb on - strand, within Atu8095 at 666.229 kb on + strand, within Atu8095 at 666.244 kb on - strand, within Atu8095
Per-strain Table
Position Strand Gene LocusTag Fraction Rosmarinic 5 mM remove 663,912 + +0.2 663,920 - +0.6 663,923 + +0.6 664,011 + -0.3 664,312 + Atu3609 0.29 -0.4 664,331 + Atu3609 0.31 +0.1 664,331 + Atu3609 0.31 -0.3 664,339 - Atu3609 0.32 +1.2 664,386 + Atu3609 0.38 +0.4 664,423 - Atu3609 0.43 +0.4 664,433 - Atu3609 0.44 +0.1 664,649 - Atu3609 0.71 +0.2 664,665 + Atu3609 0.73 +0.2 664,673 - Atu3609 0.74 +1.5 664,957 + Atu3610 0.19 +1.1 664,965 - Atu3610 0.21 -0.1 664,995 + Atu3610 0.26 +0.0 665,104 - Atu3610 0.46 -0.6 665,150 - Atu3610 0.54 +0.4 665,219 + Atu3610 0.67 +0.4 665,300 - Atu3610 0.81 +2.0 665,423 + +0.1 665,467 - -0.1 665,544 + -0.1 665,575 + Atu8095 0.12 -0.1 665,862 + Atu8095 0.41 +1.0 665,870 - Atu8095 0.42 +0.1 665,900 + Atu8095 0.45 +1.1 665,940 - Atu8095 0.49 +0.4 666,117 - Atu8095 0.66 -0.4 666,117 - Atu8095 0.66 -0.3 666,191 - Atu8095 0.74 +1.0 666,229 + Atu8095 0.78 +0.7 666,244 - Atu8095 0.79 +0.0
Or see this region's nucleotide sequence