Strain Fitness in Agrobacterium fabrum C58 around Atu2425

Experiment: Rosmarinic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rosmarinic 5 mM
2,396,110	+				+0.1
2,396,125	+				+0.1
2,396,126	+				-0.7
2,396,139	-				-0.4
2,396,462	+		Atu2424	0.27	-0.2
2,396,484	+		Atu2424	0.30	+0.3
2,396,492	-		Atu2424	0.31	+0.2
2,396,736	-		Atu2424	0.64	+1.0
2,396,761	+		Atu2424	0.68	+0.1
2,396,790	-		Atu2424	0.72	+0.6
2,396,791	-		Atu2424	0.72	+0.2
2,396,843	+		Atu2424	0.79	-0.1
2,396,871	+		Atu2424	0.83	+0.4
2,396,952	-				-0.4
2,396,971	-				+0.3
2,397,081	-				+1.0
2,397,082	-				+1.2
2,397,154	-		Atu2425	0.18	+0.1
2,397,192	-		Atu2425	0.22	+1.2
2,397,227	-		Atu2425	0.26	+0.7
2,397,290	+		Atu2425	0.33	-0.1
2,397,340	+		Atu2425	0.39	+0.2
2,397,340	+		Atu2425	0.39	+0.0
2,397,345	+		Atu2425	0.39	+0.2
2,397,348	-		Atu2425	0.40	+1.6
2,397,348	-		Atu2425	0.40	-0.3
2,397,350	-		Atu2425	0.40	-0.2
2,397,471	+		Atu2425	0.54	-0.0
2,397,476	+		Atu2425	0.54	+0.6
2,397,479	-		Atu2425	0.54	-0.0
2,397,484	+		Atu2425	0.55	+0.1
2,397,484	-		Atu2425	0.55	+0.8
2,397,496	+		Atu2425	0.56	+0.1
2,397,555	+		Atu2425	0.63	+0.3
2,397,582	-		Atu2425	0.66	-0.1
2,397,582	-		Atu2425	0.66	+0.2
2,397,814	+				-0.1
2,397,850	+				+0.1
2,397,859	-				+0.3
2,397,888	+				+0.3
2,397,888	-				-0.1
2,397,990	+				-0.0
2,398,060	+		Atu2426	0.13	+0.2
2,398,294	-		Atu2426	0.29	-0.3
2,398,342	+		Atu2426	0.33	-0.4
2,398,414	+		Atu2426	0.38	-1.0
2,398,471	-		Atu2426	0.42	+0.6
2,398,481	+		Atu2426	0.43	-0.2
2,398,489	-		Atu2426	0.43	+0.7
2,398,546	+		Atu2426	0.47	+0.2
2,398,554	-		Atu2426	0.48	-0.0
2,398,570	-		Atu2426	0.49	-0.3
2,398,667	+		Atu2426	0.56	+0.5
2,398,804	-		Atu2426	0.66	+0.3
2,398,843	-		Atu2426	0.69	-0.5