Strain Fitness in Agrobacterium fabrum C58 around Atu1994

Experiment: Rosmarinic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rosmarinic 5 mM
1,957,141	-				-0.4
1,957,153	+				+0.0
1,957,161	-				-0.1
1,957,168	+				-0.6
1,957,212	+				-0.2
1,957,212	+				-0.4
1,957,220	-				+0.1
1,957,220	-				+0.3
1,957,222	+				+0.1
1,957,225	-				-0.5
1,957,378	+		Atu1993	0.24	-0.2
1,957,425	-		Atu1993	0.29	-0.3
1,957,441	-		Atu1993	0.31	-0.2
1,957,507	+		Atu1993	0.38	-0.1
1,957,512	+		Atu1993	0.39	-1.7
1,957,512	+		Atu1993	0.39	+0.1
1,957,520	-		Atu1993	0.40	+0.4
1,957,520	-		Atu1993	0.40	-1.1
1,957,520	-		Atu1993	0.40	-3.1
1,957,553	-		Atu1993	0.44	-0.2
1,957,743	+		Atu1993	0.65	-0.3
1,957,771	+		Atu1993	0.68	-0.3
1,957,856	+		Atu1993	0.78	+0.2
1,957,880	-		Atu1993	0.80	+0.8
1,957,903	+		Atu1993	0.83	-0.1
1,957,905	+		Atu1993	0.83	-0.1
1,957,971	+				-0.5
1,957,980	-				+1.0
1,958,080	-				-0.2
1,958,281	-		Atu1994	0.38	-0.2
1,958,318	-		Atu1994	0.48	-0.4
1,958,354	+		Atu1994	0.57	+0.4
1,958,357	-		Atu1994	0.58	+0.3
1,958,403	+		Atu1994	0.69	+0.7
1,958,403	+		Atu1994	0.69	+2.0
1,958,503	-				-0.6
1,958,503	-				+0.1
1,958,595	+		Atu1995	0.11	+0.5
1,958,595	+		Atu1995	0.11	+0.2
1,958,609	-		Atu1995	0.14	+0.1
1,958,667	-		Atu1995	0.23	-0.2
1,958,674	-		Atu1995	0.25	-0.3
1,958,679	-		Atu1995	0.25	-0.1
1,958,735	-		Atu1995	0.35	-0.1
1,958,890	-		Atu1995	0.61	+0.1
1,958,938	+		Atu1995	0.69	-0.9
1,958,938	+		Atu1995	0.69	-0.1
1,958,938	+		Atu1995	0.69	+0.6
1,958,946	-		Atu1995	0.70	-0.2
1,958,946	-		Atu1995	0.70	+0.1
1,958,954	-		Atu1995	0.72	+0.5
1,958,970	+		Atu1995	0.74	-0.2
1,959,000	+		Atu1995	0.79	-0.1
1,959,010	+		Atu1995	0.81	-1.2
1,959,013	-		Atu1995	0.82	-0.0
1,959,013	-		Atu1995	0.82	-0.0
1,959,080	-				-0.1
1,959,102	+				+0.7
1,959,102	+				-0.5
1,959,110	-				-0.4
1,959,225	-		Atu1996	0.17	-0.1
1,959,275	+		Atu1996	0.27	-0.2
1,959,295	-		Atu1996	0.31	+0.4
1,959,356	+		Atu1996	0.43	+0.0
1,959,356	+		Atu1996	0.43	+0.1
1,959,356	+		Atu1996	0.43	-0.5
1,959,371	+		Atu1996	0.46	+0.1
1,959,418	+		Atu1996	0.56	-0.6
1,959,479	+		Atu1996	0.68	-0.2
1,959,487	-		Atu1996	0.69	-0.2