Experiment: Rosmarinic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0163 and Atu0164 are separated by 142 nucleotides Atu0164 and Atu0165 are separated by 220 nucleotides Atu0165 and Atu0166 are separated by 137 nucleotides Atu0166 and Atu0167 are separated by 71 nucleotides
Atu0163: Atu0163 - tonB protein, at 168,271 to 169,194
Atu0163
Atu0164: Atu0164 - putative malate dehydrogenase, at 169,337 to 170,326
Atu0164
Atu0165: Atu0165 - hypothetical protein, at 170,547 to 170,792
Atu0165
Atu0166: Atu0166 - hypothetical protein, at 170,930 to 171,184
Atu0166
Atu0167: Atu0167 - transcriptional regulator, AraC family, at 171,256 to 172,296
Atu0167
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 168.348 kb on - strand at 168.420 kb on + strand, within Atu0163 at 168.489 kb on + strand, within Atu0163 at 168.497 kb on - strand, within Atu0163 at 168.562 kb on + strand, within Atu0163 at 168.600 kb on + strand, within Atu0163 at 168.729 kb on + strand, within Atu0163 at 168.796 kb on - strand, within Atu0163 at 168.864 kb on + strand, within Atu0163 at 168.872 kb on - strand, within Atu0163 at 168.936 kb on + strand, within Atu0163 at 168.944 kb on - strand, within Atu0163 at 169.193 kb on - strand at 169.216 kb on + strand at 169.234 kb on + strand at 169.271 kb on + strand at 169.279 kb on - strand at 169.306 kb on - strand at 169.477 kb on - strand, within Atu0164 at 169.575 kb on + strand, within Atu0164 at 169.658 kb on - strand, within Atu0164 at 169.721 kb on + strand, within Atu0164 at 169.808 kb on + strand, within Atu0164 at 169.856 kb on + strand, within Atu0164 at 169.867 kb on + strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.903 kb on + strand, within Atu0164 at 169.909 kb on + strand, within Atu0164 at 169.917 kb on - strand, within Atu0164 at 169.965 kb on + strand, within Atu0164 at 169.965 kb on + strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.978 kb on - strand, within Atu0164 at 170.008 kb on + strand, within Atu0164 at 170.016 kb on + strand, within Atu0164 at 170.054 kb on - strand, within Atu0164 at 170.109 kb on - strand, within Atu0164 at 170.129 kb on - strand, within Atu0164 at 170.129 kb on - strand, within Atu0164 at 170.201 kb on + strand, within Atu0164 at 170.375 kb on + strand at 170.528 kb on + strand at 170.528 kb on + strand at 170.531 kb on - strand at 170.536 kb on - strand at 170.536 kb on - strand at 170.620 kb on - strand, within Atu0165 at 170.643 kb on + strand, within Atu0165 at 170.651 kb on + strand, within Atu0165 at 170.670 kb on + strand, within Atu0165 at 170.693 kb on + strand, within Atu0165 at 170.695 kb on + strand, within Atu0165 at 170.695 kb on + strand, within Atu0165 at 170.703 kb on - strand, within Atu0165 at 170.851 kb on + strand at 170.880 kb on + strand at 170.973 kb on - strand, within Atu0166 at 171.003 kb on - strand, within Atu0166 at 171.007 kb on + strand, within Atu0166 at 171.115 kb on - strand, within Atu0166 at 171.300 kb on + strand at 171.313 kb on - strand at 171.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rosmarinic 5 mM remove 168,348 - -1.8 168,420 + Atu0163 0.16 -2.8 168,489 + Atu0163 0.24 -2.1 168,497 - Atu0163 0.24 -2.7 168,562 + Atu0163 0.31 -3.4 168,600 + Atu0163 0.36 -2.8 168,729 + Atu0163 0.50 -2.6 168,796 - Atu0163 0.57 -3.3 168,864 + Atu0163 0.64 -2.8 168,872 - Atu0163 0.65 -1.4 168,936 + Atu0163 0.72 -2.8 168,944 - Atu0163 0.73 -2.7 169,193 - -0.9 169,216 + -0.1 169,234 + +0.1 169,271 + -0.3 169,279 - +0.1 169,306 - -0.1 169,477 - Atu0164 0.14 +0.2 169,575 + Atu0164 0.24 -0.9 169,658 - Atu0164 0.32 +0.1 169,721 + Atu0164 0.39 +0.1 169,808 + Atu0164 0.48 -0.1 169,856 + Atu0164 0.52 +0.2 169,867 + Atu0164 0.54 +0.2 169,875 - Atu0164 0.54 -0.2 169,875 - Atu0164 0.54 -0.0 169,875 - Atu0164 0.54 -0.3 169,903 + Atu0164 0.57 -0.0 169,909 + Atu0164 0.58 +0.2 169,917 - Atu0164 0.59 -0.1 169,965 + Atu0164 0.63 +0.4 169,965 + Atu0164 0.63 +0.2 169,973 - Atu0164 0.64 -0.7 169,973 - Atu0164 0.64 +0.2 169,973 - Atu0164 0.64 -0.4 169,973 - Atu0164 0.64 +0.1 169,978 - Atu0164 0.65 +1.0 170,008 + Atu0164 0.68 +0.3 170,016 + Atu0164 0.69 -0.2 170,054 - Atu0164 0.72 +0.4 170,109 - Atu0164 0.78 +0.4 170,129 - Atu0164 0.80 -0.4 170,129 - Atu0164 0.80 +0.6 170,201 + Atu0164 0.87 +0.3 170,375 + -0.7 170,528 + -0.2 170,528 + +0.1 170,531 - +0.1 170,536 - -0.0 170,536 - -0.4 170,620 - Atu0165 0.30 -0.3 170,643 + Atu0165 0.39 +0.6 170,651 + Atu0165 0.42 +0.2 170,670 + Atu0165 0.50 -0.1 170,693 + Atu0165 0.59 +0.1 170,695 + Atu0165 0.60 +0.3 170,695 + Atu0165 0.60 -0.5 170,703 - Atu0165 0.63 -0.4 170,851 + -0.1 170,880 + -0.4 170,973 - Atu0166 0.17 -0.0 171,003 - Atu0166 0.29 -0.3 171,007 + Atu0166 0.30 +0.6 171,115 - Atu0166 0.73 +0.1 171,300 + -0.3 171,313 - -0.8 171,314 - +0.4
Or see this region's nucleotide sequence