Experiment: carbon source D-Glucose 55.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3564 and PP_3565 are separated by 104 nucleotides PP_3565 and PP_3566 are separated by 48 nucleotides
PP_3564: PP_3564 - Transcriptional regulator, AraC family, at 4,042,766 to 4,043,743
_3564
PP_3565: PP_3565 - Transporter, LysE family, at 4,043,848 to 4,044,459
_3565
PP_3566: PP_3566 - Major facilitator family transporter, at 4,044,508 to 4,045,707
_3566
Position (kb) 4043
4044
4045 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4043.207 kb on + strand, within PP_3564 at 4043.208 kb on - strand, within PP_3564 at 4043.208 kb on - strand, within PP_3564 at 4043.225 kb on + strand, within PP_3564 at 4043.226 kb on - strand, within PP_3564 at 4043.274 kb on + strand, within PP_3564 at 4043.274 kb on + strand, within PP_3564 at 4043.275 kb on - strand, within PP_3564 at 4043.519 kb on + strand, within PP_3564 at 4043.520 kb on - strand, within PP_3564 at 4043.637 kb on + strand, within PP_3564 at 4043.780 kb on + strand at 4043.781 kb on - strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.811 kb on - strand at 4043.811 kb on - strand at 4043.811 kb on - strand at 4043.872 kb on + strand at 4043.872 kb on + strand at 4043.872 kb on + strand at 4043.873 kb on - strand at 4043.947 kb on + strand, within PP_3565 at 4043.948 kb on - strand, within PP_3565 at 4044.091 kb on + strand, within PP_3565 at 4044.116 kb on + strand, within PP_3565 at 4044.117 kb on - strand, within PP_3565 at 4044.117 kb on - strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.236 kb on - strand, within PP_3565 at 4044.236 kb on - strand, within PP_3565 at 4044.659 kb on + strand, within PP_3566 at 4044.659 kb on + strand, within PP_3566 at 4044.659 kb on + strand, within PP_3566 at 4044.660 kb on - strand, within PP_3566 at 4044.701 kb on + strand, within PP_3566 at 4044.701 kb on + strand, within PP_3566 at 4044.702 kb on - strand, within PP_3566 at 4044.702 kb on - strand, within PP_3566 at 4044.899 kb on - strand, within PP_3566 at 4044.899 kb on - strand, within PP_3566 at 4044.992 kb on + strand, within PP_3566 at 4045.025 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.094 kb on + strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.095 kb on - strand, within PP_3566 at 4045.269 kb on + strand, within PP_3566 at 4045.418 kb on - strand, within PP_3566 at 4045.418 kb on - strand, within PP_3566
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source D-Glucose 55.5 mM remove 4,043,207 + PP_3564 0.45 +2.5 4,043,208 - PP_3564 0.45 -0.4 4,043,208 - PP_3564 0.45 +0.7 4,043,225 + PP_3564 0.47 -0.7 4,043,226 - PP_3564 0.47 +0.9 4,043,274 + PP_3564 0.52 -0.7 4,043,274 + PP_3564 0.52 +1.5 4,043,275 - PP_3564 0.52 +1.0 4,043,519 + PP_3564 0.77 +1.6 4,043,520 - PP_3564 0.77 +1.5 4,043,637 + PP_3564 0.89 +2.8 4,043,780 + -4.4 4,043,781 - +0.1 4,043,810 + +1.3 4,043,810 + +0.3 4,043,810 + -2.1 4,043,810 + -1.6 4,043,811 - -1.1 4,043,811 - -0.9 4,043,811 - -1.5 4,043,872 + +1.1 4,043,872 + +0.5 4,043,872 + +3.5 4,043,873 - -0.0 4,043,947 + PP_3565 0.16 -0.8 4,043,948 - PP_3565 0.16 +0.1 4,044,091 + PP_3565 0.40 +1.3 4,044,116 + PP_3565 0.44 +3.1 4,044,117 - PP_3565 0.44 +2.1 4,044,117 - PP_3565 0.44 -0.6 4,044,235 + PP_3565 0.63 -0.7 4,044,235 + PP_3565 0.63 +1.7 4,044,235 + PP_3565 0.63 +0.5 4,044,235 + PP_3565 0.63 -1.2 4,044,235 + PP_3565 0.63 +0.3 4,044,235 + PP_3565 0.63 +1.3 4,044,235 + PP_3565 0.63 -1.8 4,044,235 + PP_3565 0.63 +0.7 4,044,236 - PP_3565 0.63 -1.4 4,044,236 - PP_3565 0.63 -2.8 4,044,659 + PP_3566 0.13 -1.1 4,044,659 + PP_3566 0.13 +0.0 4,044,659 + PP_3566 0.13 +0.9 4,044,660 - PP_3566 0.13 +0.5 4,044,701 + PP_3566 0.16 -0.3 4,044,701 + PP_3566 0.16 +0.5 4,044,702 - PP_3566 0.16 -0.1 4,044,702 - PP_3566 0.16 +0.4 4,044,899 - PP_3566 0.33 -1.5 4,044,899 - PP_3566 0.33 -0.7 4,044,992 + PP_3566 0.40 +0.0 4,045,025 + PP_3566 0.43 +0.0 4,045,094 + PP_3566 0.49 -0.9 4,045,094 + PP_3566 0.49 +0.5 4,045,094 + PP_3566 0.49 -1.3 4,045,094 + PP_3566 0.49 +0.7 4,045,095 - PP_3566 0.49 -1.3 4,045,095 - PP_3566 0.49 +2.1 4,045,095 - PP_3566 0.49 -1.6 4,045,095 - PP_3566 0.49 -1.1 4,045,269 + PP_3566 0.63 -3.5 4,045,418 - PP_3566 0.76 -1.2 4,045,418 - PP_3566 0.76 -2.3
Or see this region's nucleotide sequence