Experiment: Rosmarinic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0161 and Atu0162 are separated by 6 nucleotides Atu0162 and Atu0163 overlap by 4 nucleotides
Atu0161: Atu0161 - biopolymer transport protein, at 166,742 to 167,764
Atu0161
Atu0162: Atu0162 - biopolymer transport protein, at 167,771 to 168,274
Atu0162
Atu0163: Atu0163 - tonB protein, at 168,271 to 169,194
Atu0163
Position (kb) 167
168
169 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 166.783 kb on - strand at 166.810 kb on + strand at 166.897 kb on + strand, within Atu0161 at 166.912 kb on + strand, within Atu0161 at 166.920 kb on - strand, within Atu0161 at 166.920 kb on - strand, within Atu0161 at 166.926 kb on + strand, within Atu0161 at 166.934 kb on - strand, within Atu0161 at 166.934 kb on - strand, within Atu0161 at 166.968 kb on - strand, within Atu0161 at 167.022 kb on + strand, within Atu0161 at 167.090 kb on + strand, within Atu0161 at 167.099 kb on + strand, within Atu0161 at 167.175 kb on - strand, within Atu0161 at 167.254 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.354 kb on - strand, within Atu0161 at 167.380 kb on + strand, within Atu0161 at 167.464 kb on + strand, within Atu0161 at 167.474 kb on + strand, within Atu0161 at 167.482 kb on - strand, within Atu0161 at 167.618 kb on + strand, within Atu0161 at 167.626 kb on - strand, within Atu0161 at 167.663 kb on + strand at 167.837 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.126 kb on + strand, within Atu0162 at 168.204 kb on - strand, within Atu0162 at 168.236 kb on - strand at 168.256 kb on + strand at 168.256 kb on + strand at 168.261 kb on + strand at 168.262 kb on - strand at 168.322 kb on + strand at 168.348 kb on - strand at 168.420 kb on + strand, within Atu0163 at 168.489 kb on + strand, within Atu0163 at 168.497 kb on - strand, within Atu0163 at 168.562 kb on + strand, within Atu0163 at 168.600 kb on + strand, within Atu0163 at 168.729 kb on + strand, within Atu0163 at 168.796 kb on - strand, within Atu0163 at 168.864 kb on + strand, within Atu0163 at 168.872 kb on - strand, within Atu0163 at 168.936 kb on + strand, within Atu0163 at 168.944 kb on - strand, within Atu0163 at 169.193 kb on - strand at 169.216 kb on + strand at 169.234 kb on + strand at 169.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rosmarinic 5 mM remove 166,783 - -2.7 166,810 + -3.2 166,897 + Atu0161 0.15 -1.4 166,912 + Atu0161 0.17 -2.8 166,920 - Atu0161 0.17 -2.8 166,920 - Atu0161 0.17 -2.5 166,926 + Atu0161 0.18 -2.5 166,934 - Atu0161 0.19 -1.7 166,934 - Atu0161 0.19 -1.3 166,968 - Atu0161 0.22 -2.8 167,022 + Atu0161 0.27 -2.5 167,090 + Atu0161 0.34 -2.2 167,099 + Atu0161 0.35 -3.8 167,175 - Atu0161 0.42 -2.2 167,254 + Atu0161 0.50 -2.1 167,346 + Atu0161 0.59 -1.8 167,346 + Atu0161 0.59 -2.7 167,354 - Atu0161 0.60 -3.1 167,380 + Atu0161 0.62 -3.2 167,464 + Atu0161 0.71 -1.8 167,474 + Atu0161 0.72 -2.2 167,482 - Atu0161 0.72 -0.0 167,618 + Atu0161 0.86 -1.7 167,626 - Atu0161 0.86 -1.5 167,663 + -2.4 167,837 + Atu0162 0.13 -3.8 168,038 + Atu0162 0.53 -3.3 168,038 + Atu0162 0.53 -3.0 168,126 + Atu0162 0.70 +1.0 168,204 - Atu0162 0.86 -0.1 168,236 - -0.2 168,256 + -0.2 168,256 + -0.1 168,261 + +0.2 168,262 - -0.2 168,322 + -2.2 168,348 - -4.0 168,420 + Atu0163 0.16 -3.4 168,489 + Atu0163 0.24 -1.7 168,497 - Atu0163 0.24 -1.7 168,562 + Atu0163 0.31 -3.0 168,600 + Atu0163 0.36 -3.2 168,729 + Atu0163 0.50 -1.0 168,796 - Atu0163 0.57 -2.9 168,864 + Atu0163 0.64 -1.8 168,872 - Atu0163 0.65 -1.0 168,936 + Atu0163 0.72 -3.0 168,944 - Atu0163 0.73 -2.3 169,193 - -0.5 169,216 + +0.2 169,234 + +0.1 169,271 + -0.5
Or see this region's nucleotide sequence