Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5539 and Atu5540 overlap by 4 nucleotides Atu5540 and Atu5541 overlap by 4 nucleotides
Atu5539: Atu5539 - HlyD family secretion protein, at 534,191 to 535,066
Atu5539
Atu5540: Atu5540 - hypothetical protein, at 535,063 to 535,272
Atu5540
Atu5541: Atu5541 - hypothetical protein, at 535,269 to 537,218
Atu5541
Position (kb) 535
536 Strain fitness (log2 ratio) -1
0
1 at 534.081 kb on + strand at 534.084 kb on - strand at 534.084 kb on - strand at 534.089 kb on - strand at 534.091 kb on + strand at 534.143 kb on + strand at 534.187 kb on - strand at 534.187 kb on - strand at 534.225 kb on - strand at 534.225 kb on - strand at 534.246 kb on - strand at 534.303 kb on - strand, within Atu5539 at 534.308 kb on - strand, within Atu5539 at 534.339 kb on + strand, within Atu5539 at 534.422 kb on - strand, within Atu5539 at 534.422 kb on - strand, within Atu5539 at 534.426 kb on + strand, within Atu5539 at 534.477 kb on - strand, within Atu5539 at 534.551 kb on + strand, within Atu5539 at 534.597 kb on + strand, within Atu5539 at 534.615 kb on + strand, within Atu5539 at 534.617 kb on - strand, within Atu5539 at 534.640 kb on + strand, within Atu5539 at 534.715 kb on + strand, within Atu5539 at 534.715 kb on - strand, within Atu5539 at 534.771 kb on + strand, within Atu5539 at 534.773 kb on - strand, within Atu5539 at 534.940 kb on + strand, within Atu5539 at 534.940 kb on + strand, within Atu5539 at 534.959 kb on + strand, within Atu5539 at 534.992 kb on + strand at 535.008 kb on - strand at 535.109 kb on + strand, within Atu5540 at 535.253 kb on + strand at 535.271 kb on + strand at 535.305 kb on - strand at 535.351 kb on - strand at 535.351 kb on - strand at 535.376 kb on + strand at 535.408 kb on - strand at 535.444 kb on - strand at 535.506 kb on + strand, within Atu5541 at 535.506 kb on + strand, within Atu5541 at 535.506 kb on + strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.516 kb on - strand, within Atu5541 at 535.518 kb on + strand, within Atu5541 at 535.536 kb on - strand, within Atu5541 at 535.565 kb on - strand, within Atu5541 at 535.565 kb on - strand, within Atu5541 at 535.595 kb on - strand, within Atu5541 at 535.619 kb on + strand, within Atu5541 at 535.620 kb on - strand, within Atu5541 at 535.669 kb on + strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.795 kb on + strand, within Atu5541 at 535.795 kb on + strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.946 kb on - strand, within Atu5541 at 535.946 kb on - strand, within Atu5541 at 535.962 kb on - strand, within Atu5541 at 535.964 kb on + strand, within Atu5541 at 535.970 kb on + strand, within Atu5541 at 536.130 kb on - strand, within Atu5541 at 536.138 kb on + strand, within Atu5541 at 536.194 kb on - strand, within Atu5541 at 536.212 kb on + strand, within Atu5541 at 536.256 kb on + strand, within Atu5541 at 536.271 kb on + strand, within Atu5541
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 534,081 + -0.7 534,084 - +0.0 534,084 - +0.0 534,089 - +0.4 534,091 + +0.4 534,143 + +0.4 534,187 - -0.1 534,187 - -0.4 534,225 - -0.8 534,225 - +0.3 534,246 - -1.0 534,303 - Atu5539 0.13 -0.4 534,308 - Atu5539 0.13 +0.1 534,339 + Atu5539 0.17 -0.5 534,422 - Atu5539 0.26 -0.1 534,422 - Atu5539 0.26 +0.3 534,426 + Atu5539 0.27 +0.2 534,477 - Atu5539 0.33 -0.9 534,551 + Atu5539 0.41 -0.4 534,597 + Atu5539 0.46 -0.1 534,615 + Atu5539 0.48 -0.2 534,617 - Atu5539 0.49 -0.0 534,640 + Atu5539 0.51 +0.1 534,715 + Atu5539 0.60 +0.1 534,715 - Atu5539 0.60 -0.3 534,771 + Atu5539 0.66 +0.6 534,773 - Atu5539 0.66 -0.4 534,940 + Atu5539 0.86 +0.5 534,940 + Atu5539 0.86 +0.3 534,959 + Atu5539 0.88 -0.1 534,992 + +1.3 535,008 - -0.1 535,109 + Atu5540 0.22 +1.0 535,253 + -0.0 535,271 + -0.6 535,305 - +0.7 535,351 - +0.1 535,351 - +0.0 535,376 + -0.4 535,408 - -0.5 535,444 - +0.1 535,506 + Atu5541 0.12 -0.5 535,506 + Atu5541 0.12 -0.1 535,506 + Atu5541 0.12 -0.2 535,514 - Atu5541 0.13 -0.3 535,514 - Atu5541 0.13 +1.5 535,514 - Atu5541 0.13 -0.3 535,514 - Atu5541 0.13 +1.0 535,516 - Atu5541 0.13 +0.2 535,518 + Atu5541 0.13 -0.1 535,536 - Atu5541 0.14 -0.1 535,565 - Atu5541 0.15 -0.6 535,565 - Atu5541 0.15 -0.2 535,595 - Atu5541 0.17 -0.0 535,619 + Atu5541 0.18 +0.2 535,620 - Atu5541 0.18 -0.2 535,669 + Atu5541 0.21 +0.3 535,776 - Atu5541 0.26 +0.6 535,776 - Atu5541 0.26 -0.7 535,776 - Atu5541 0.26 -0.4 535,795 + Atu5541 0.27 +0.1 535,795 + Atu5541 0.27 +0.0 535,803 - Atu5541 0.27 -0.1 535,803 - Atu5541 0.27 +0.2 535,803 - Atu5541 0.27 +1.1 535,946 - Atu5541 0.35 -0.3 535,946 - Atu5541 0.35 -0.4 535,962 - Atu5541 0.36 +0.3 535,964 + Atu5541 0.36 +0.3 535,970 + Atu5541 0.36 -1.1 536,130 - Atu5541 0.44 +0.0 536,138 + Atu5541 0.45 +0.2 536,194 - Atu5541 0.47 +1.1 536,212 + Atu5541 0.48 +0.7 536,256 + Atu5541 0.51 -0.2 536,271 + Atu5541 0.51 -0.9
Or see this region's nucleotide sequence