Strain Fitness in Agrobacterium fabrum C58 around Atu5421

Experiment: methyl jasmonate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5420 and Atu5421 are separated by 84 nucleotidesAtu5421 and Atu5422 are separated by 9 nucleotidesAtu5422 and Atu5423 are separated by 3 nucleotides Atu5420: Atu5420 - ABC transporter substrate binding protein (putrescine), at 414,780 to 415,880 Atu5420 Atu5421: Atu5421 - ABC transporter membrane spanning protein (putrescine), at 415,965 to 416,948 Atu5421 Atu5422: Atu5422 - ABC transporter membrane spanning protein (putrescine), at 416,958 to 417,749 Atu5422 Atu5423: Atu5423 - ABC transporter nucleotide binding/ATPase (putrescine), at 417,753 to 418,823 Atu5423 Position (kb) 415 416 417Strain fitness (log2 ratio) -2 -1 0 1 2at 415.084 kb on + strand, within Atu5420at 415.101 kb on - strand, within Atu5420at 415.111 kb on - strand, within Atu5420at 415.154 kb on - strand, within Atu5420at 415.156 kb on - strand, within Atu5420at 415.192 kb on - strand, within Atu5420at 415.233 kb on + strand, within Atu5420at 415.248 kb on - strand, within Atu5420at 415.289 kb on - strand, within Atu5420at 415.290 kb on + strand, within Atu5420at 415.291 kb on - strand, within Atu5420at 415.307 kb on - strand, within Atu5420at 415.328 kb on + strand, within Atu5420at 415.336 kb on - strand, within Atu5420at 415.363 kb on - strand, within Atu5420at 415.392 kb on - strand, within Atu5420at 415.459 kb on - strand, within Atu5420at 415.465 kb on + strand, within Atu5420at 415.514 kb on + strand, within Atu5420at 415.514 kb on + strand, within Atu5420at 415.514 kb on + strand, within Atu5420at 415.514 kb on + strand, within Atu5420at 415.522 kb on - strand, within Atu5420at 415.558 kb on - strand, within Atu5420at 415.606 kb on + strand, within Atu5420at 415.617 kb on + strand, within Atu5420at 415.644 kb on + strand, within Atu5420at 415.652 kb on - strand, within Atu5420at 415.652 kb on - strand, within Atu5420at 415.652 kb on - strand, within Atu5420at 415.655 kb on + strand, within Atu5420at 415.655 kb on + strand, within Atu5420at 415.665 kb on + strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.673 kb on - strand, within Atu5420at 415.698 kb on + strand, within Atu5420at 415.722 kb on + strand, within Atu5420at 415.873 kb on - strandat 415.873 kb on - strandat 415.873 kb on - strandat 415.873 kb on - strandat 415.873 kb on - strandat 415.879 kb on + strandat 415.898 kb on + strandat 415.903 kb on + strandat 415.906 kb on - strandat 415.906 kb on - strandat 415.970 kb on + strandat 415.981 kb on + strandat 415.981 kb on + strandat 416.031 kb on - strandat 416.033 kb on + strandat 416.055 kb on + strandat 416.055 kb on + strandat 416.078 kb on - strand, within Atu5421at 416.160 kb on - strand, within Atu5421at 416.206 kb on - strand, within Atu5421at 416.247 kb on + strand, within Atu5421at 416.252 kb on + strand, within Atu5421at 416.255 kb on - strand, within Atu5421at 416.311 kb on + strand, within Atu5421at 416.417 kb on + strand, within Atu5421at 416.430 kb on + strand, within Atu5421at 416.438 kb on - strand, within Atu5421at 416.481 kb on - strand, within Atu5421at 416.539 kb on - strand, within Atu5421at 416.547 kb on + strand, within Atu5421at 416.552 kb on + strand, within Atu5421at 416.654 kb on - strand, within Atu5421at 416.657 kb on - strand, within Atu5421at 416.691 kb on - strand, within Atu5421at 416.746 kb on - strand, within Atu5421at 416.774 kb on - strand, within Atu5421at 416.820 kb on + strand, within Atu5421at 416.838 kb on - strand, within Atu5421at 416.846 kb on + strand, within Atu5421at 416.867 kb on - strandat 416.951 kb on - strandat 416.975 kb on - strandat 417.012 kb on - strandat 417.061 kb on + strand, within Atu5422at 417.069 kb on - strand, within Atu5422at 417.124 kb on - strand, within Atu5422at 417.305 kb on + strand, within Atu5422at 417.313 kb on - strand, within Atu5422at 417.350 kb on - strand, within Atu5422at 417.377 kb on + strand, within Atu5422at 417.377 kb on + strand, within Atu5422at 417.377 kb on + strand, within Atu5422at 417.385 kb on - strand, within Atu5422at 417.385 kb on - strand, within Atu5422at 417.425 kb on - strand, within Atu5422at 417.425 kb on - strand, within Atu5422at 417.433 kb on + strand, within Atu5422at 417.520 kb on - strand, within Atu5422at 417.520 kb on - strand, within Atu5422at 417.565 kb on + strand, within Atu5422at 417.586 kb on + strand, within Atu5422at 417.586 kb on + strand, within Atu5422at 417.594 kb on - strand, within Atu5422at 417.594 kb on - strand, within Atu5422at 417.621 kb on + strand, within Atu5422at 417.662 kb on + strand, within Atu5422at 417.675 kb on - strandat 417.723 kb on - strandat 417.756 kb on - strandat 417.756 kb on - strandat 417.788 kb on + strandat 417.802 kb on + strandat 417.824 kb on + strandat 417.825 kb on - strandat 417.847 kb on + strandat 417.857 kb on + strandat 417.873 kb on - strand, within Atu5423at 417.899 kb on + strand, within Atu5423

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM
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415,084 + Atu5420 0.28 -0.2
415,101 - Atu5420 0.29 -0.3
415,111 - Atu5420 0.30 -0.8
415,154 - Atu5420 0.34 -0.2
415,156 - Atu5420 0.34 +0.2
415,192 - Atu5420 0.37 +0.1
415,233 + Atu5420 0.41 -0.4
415,248 - Atu5420 0.43 -0.1
415,289 - Atu5420 0.46 -0.7
415,290 + Atu5420 0.46 +0.1
415,291 - Atu5420 0.46 +1.0
415,307 - Atu5420 0.48 -1.0
415,328 + Atu5420 0.50 +0.4
415,336 - Atu5420 0.50 +0.3
415,363 - Atu5420 0.53 -0.1
415,392 - Atu5420 0.56 +1.2
415,459 - Atu5420 0.62 -0.2
415,465 + Atu5420 0.62 +0.2
415,514 + Atu5420 0.67 -0.2
415,514 + Atu5420 0.67 +0.3
415,514 + Atu5420 0.67 -0.1
415,514 + Atu5420 0.67 +0.1
415,522 - Atu5420 0.67 +0.0
415,558 - Atu5420 0.71 -0.7
415,606 + Atu5420 0.75 -0.1
415,617 + Atu5420 0.76 +0.5
415,644 + Atu5420 0.78 -0.1
415,652 - Atu5420 0.79 +1.0
415,652 - Atu5420 0.79 -0.7
415,652 - Atu5420 0.79 -0.1
415,655 + Atu5420 0.79 -0.9
415,655 + Atu5420 0.79 -0.0
415,665 + Atu5420 0.80 +0.5
415,673 - Atu5420 0.81 +0.2
415,673 - Atu5420 0.81 +0.3
415,673 - Atu5420 0.81 -0.0
415,673 - Atu5420 0.81 -0.0
415,673 - Atu5420 0.81 +0.4
415,698 + Atu5420 0.83 -0.1
415,722 + Atu5420 0.86 +2.1
415,873 - +0.4
415,873 - +0.4
415,873 - -0.5
415,873 - -0.0
415,873 - +0.0
415,879 + -0.9
415,898 + +0.6
415,903 + -0.5
415,906 - -0.2
415,906 - +0.3
415,970 + -0.4
415,981 + -0.7
415,981 + +0.1
416,031 - +0.1
416,033 + -0.0
416,055 + -0.0
416,055 + +0.3
416,078 - Atu5421 0.11 +0.6
416,160 - Atu5421 0.20 +0.3
416,206 - Atu5421 0.24 -0.0
416,247 + Atu5421 0.29 -0.1
416,252 + Atu5421 0.29 +0.4
416,255 - Atu5421 0.29 -0.2
416,311 + Atu5421 0.35 +0.6
416,417 + Atu5421 0.46 -0.2
416,430 + Atu5421 0.47 +0.5
416,438 - Atu5421 0.48 -1.9
416,481 - Atu5421 0.52 -0.4
416,539 - Atu5421 0.58 -0.2
416,547 + Atu5421 0.59 +0.7
416,552 + Atu5421 0.60 +0.9
416,654 - Atu5421 0.70 +0.1
416,657 - Atu5421 0.70 +0.7
416,691 - Atu5421 0.74 +0.7
416,746 - Atu5421 0.79 +0.1
416,774 - Atu5421 0.82 +0.2
416,820 + Atu5421 0.87 +1.7
416,838 - Atu5421 0.89 +0.0
416,846 + Atu5421 0.90 +2.1
416,867 - -0.5
416,951 - +0.0
416,975 - +0.2
417,012 - +0.2
417,061 + Atu5422 0.13 -0.2
417,069 - Atu5422 0.14 -0.0
417,124 - Atu5422 0.21 +0.9
417,305 + Atu5422 0.44 +0.2
417,313 - Atu5422 0.45 -0.1
417,350 - Atu5422 0.49 +0.0
417,377 + Atu5422 0.53 -0.2
417,377 + Atu5422 0.53 +0.3
417,377 + Atu5422 0.53 -0.2
417,385 - Atu5422 0.54 +0.6
417,385 - Atu5422 0.54 +0.6
417,425 - Atu5422 0.59 -0.3
417,425 - Atu5422 0.59 +0.2
417,433 + Atu5422 0.60 +0.1
417,520 - Atu5422 0.71 +0.5
417,520 - Atu5422 0.71 -0.4
417,565 + Atu5422 0.77 -0.4
417,586 + Atu5422 0.79 -0.1
417,586 + Atu5422 0.79 +0.5
417,594 - Atu5422 0.80 -0.2
417,594 - Atu5422 0.80 +0.1
417,621 + Atu5422 0.84 -0.1
417,662 + Atu5422 0.89 +0.1
417,675 - +0.3
417,723 - -0.1
417,756 - +0.2
417,756 - -0.2
417,788 + +0.0
417,802 + -0.0
417,824 + -0.2
417,825 - -0.2
417,847 + -0.3
417,857 + +0.4
417,873 - Atu5423 0.11 +0.4
417,899 + Atu5423 0.14 -0.1

Or see this region's nucleotide sequence