Strain Fitness in Agrobacterium fabrum C58 around Atu5097

Experiment: methyl jasmonate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5096 and Atu5097 are separated by 55 nucleotidesAtu5097 and Atu5098 are separated by 272 nucleotides Atu5096: Atu5096 - hypothetical protein, at 100,310 to 101,083 Atu5096 Atu5097: Atu5097 - ATP-dependent DNA ligase, at 101,139 to 102,191 Atu5097 Atu5098: Atu5098 - hypothetical protein, at 102,464 to 103,216 Atu5098 Position (kb) 101 102 103Strain fitness (log2 ratio) -1 0 1 2at 100.215 kb on + strandat 100.260 kb on - strandat 100.291 kb on - strandat 100.291 kb on - strandat 100.338 kb on - strandat 100.364 kb on + strandat 100.364 kb on + strandat 100.373 kb on - strandat 100.431 kb on - strand, within Atu5096at 100.433 kb on + strand, within Atu5096at 100.433 kb on + strand, within Atu5096at 100.433 kb on + strand, within Atu5096at 100.433 kb on + strand, within Atu5096at 100.496 kb on - strand, within Atu5096at 100.507 kb on - strand, within Atu5096at 100.517 kb on - strand, within Atu5096at 100.517 kb on - strand, within Atu5096at 100.517 kb on - strand, within Atu5096at 100.560 kb on + strand, within Atu5096at 100.571 kb on + strand, within Atu5096at 100.615 kb on - strand, within Atu5096at 100.661 kb on - strand, within Atu5096at 100.744 kb on - strand, within Atu5096at 100.775 kb on - strand, within Atu5096at 100.790 kb on + strand, within Atu5096at 100.802 kb on + strand, within Atu5096at 100.810 kb on - strand, within Atu5096at 100.810 kb on - strand, within Atu5096at 100.810 kb on - strand, within Atu5096at 100.810 kb on - strand, within Atu5096at 100.839 kb on + strand, within Atu5096at 100.839 kb on + strand, within Atu5096at 100.839 kb on + strand, within Atu5096at 100.859 kb on - strand, within Atu5096at 100.889 kb on - strand, within Atu5096at 100.915 kb on - strand, within Atu5096at 100.915 kb on - strand, within Atu5096at 100.915 kb on - strand, within Atu5096at 101.073 kb on + strandat 101.141 kb on + strandat 101.166 kb on + strandat 101.185 kb on + strandat 101.251 kb on - strand, within Atu5097at 101.260 kb on - strand, within Atu5097at 101.423 kb on + strand, within Atu5097at 101.478 kb on + strand, within Atu5097at 101.506 kb on + strand, within Atu5097at 101.528 kb on + strand, within Atu5097at 101.536 kb on + strand, within Atu5097at 101.544 kb on - strand, within Atu5097at 101.584 kb on - strand, within Atu5097at 101.735 kb on + strand, within Atu5097at 101.735 kb on + strand, within Atu5097at 101.742 kb on + strand, within Atu5097at 101.743 kb on + strand, within Atu5097at 101.970 kb on + strand, within Atu5097at 102.000 kb on - strand, within Atu5097at 102.008 kb on - strand, within Atu5097at 102.015 kb on + strand, within Atu5097at 102.025 kb on - strand, within Atu5097at 102.048 kb on - strand, within Atu5097at 102.112 kb on - strandat 102.167 kb on + strandat 102.175 kb on - strandat 102.203 kb on - strandat 102.223 kb on - strandat 102.301 kb on + strandat 102.359 kb on - strandat 102.364 kb on + strandat 102.372 kb on - strandat 102.372 kb on - strandat 102.372 kb on - strandat 102.468 kb on + strandat 102.473 kb on + strandat 102.521 kb on - strandat 102.555 kb on + strand, within Atu5098at 102.601 kb on + strand, within Atu5098at 102.704 kb on - strand, within Atu5098at 102.726 kb on + strand, within Atu5098at 102.739 kb on - strand, within Atu5098at 102.767 kb on + strand, within Atu5098at 102.767 kb on + strand, within Atu5098at 102.801 kb on + strand, within Atu5098at 102.801 kb on + strand, within Atu5098at 102.803 kb on + strand, within Atu5098at 102.812 kb on + strand, within Atu5098at 102.820 kb on - strand, within Atu5098at 102.889 kb on + strand, within Atu5098at 102.957 kb on + strand, within Atu5098at 102.975 kb on - strand, within Atu5098at 102.975 kb on - strand, within Atu5098at 103.060 kb on + strand, within Atu5098at 103.060 kb on + strand, within Atu5098at 103.067 kb on + strand, within Atu5098at 103.090 kb on - strand, within Atu5098at 103.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM
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100,215 + +0.1
100,260 - +0.1
100,291 - +0.2
100,291 - +0.2
100,338 - -0.7
100,364 + +1.0
100,364 + +0.3
100,373 - +1.2
100,431 - Atu5096 0.16 -0.3
100,433 + Atu5096 0.16 -0.9
100,433 + Atu5096 0.16 -0.1
100,433 + Atu5096 0.16 -0.8
100,433 + Atu5096 0.16 -0.3
100,496 - Atu5096 0.24 +1.5
100,507 - Atu5096 0.25 -1.5
100,517 - Atu5096 0.27 +0.0
100,517 - Atu5096 0.27 +1.0
100,517 - Atu5096 0.27 +0.4
100,560 + Atu5096 0.32 +0.4
100,571 + Atu5096 0.34 -0.7
100,615 - Atu5096 0.39 +0.9
100,661 - Atu5096 0.45 -0.3
100,744 - Atu5096 0.56 +1.4
100,775 - Atu5096 0.60 -1.0
100,790 + Atu5096 0.62 +0.2
100,802 + Atu5096 0.64 +0.1
100,810 - Atu5096 0.65 -0.4
100,810 - Atu5096 0.65 -0.0
100,810 - Atu5096 0.65 +0.9
100,810 - Atu5096 0.65 -0.0
100,839 + Atu5096 0.68 +1.1
100,839 + Atu5096 0.68 -1.2
100,839 + Atu5096 0.68 +0.5
100,859 - Atu5096 0.71 +0.3
100,889 - Atu5096 0.75 -0.3
100,915 - Atu5096 0.78 -0.3
100,915 - Atu5096 0.78 -0.1
100,915 - Atu5096 0.78 +1.5
101,073 + -0.1
101,141 + +0.7
101,166 + -0.5
101,185 + -0.5
101,251 - Atu5097 0.11 +0.3
101,260 - Atu5097 0.11 -0.1
101,423 + Atu5097 0.27 -0.1
101,478 + Atu5097 0.32 -0.1
101,506 + Atu5097 0.35 +0.2
101,528 + Atu5097 0.37 +0.1
101,536 + Atu5097 0.38 +0.7
101,544 - Atu5097 0.38 +0.3
101,584 - Atu5097 0.42 +0.1
101,735 + Atu5097 0.57 -0.0
101,735 + Atu5097 0.57 -0.5
101,742 + Atu5097 0.57 +0.7
101,743 + Atu5097 0.57 +0.2
101,970 + Atu5097 0.79 +0.3
102,000 - Atu5097 0.82 -0.1
102,008 - Atu5097 0.83 +1.4
102,015 + Atu5097 0.83 +1.9
102,025 - Atu5097 0.84 -0.2
102,048 - Atu5097 0.86 +1.0
102,112 - +0.4
102,167 + -0.2
102,175 - +0.0
102,203 - +0.1
102,223 - -0.0
102,301 + -0.6
102,359 - +0.3
102,364 + -0.1
102,372 - -0.1
102,372 - +0.5
102,372 - +0.4
102,468 + +0.4
102,473 + -0.2
102,521 - +0.1
102,555 + Atu5098 0.12 +0.4
102,601 + Atu5098 0.18 +1.2
102,704 - Atu5098 0.32 +0.1
102,726 + Atu5098 0.35 +0.1
102,739 - Atu5098 0.37 +1.0
102,767 + Atu5098 0.40 -0.1
102,767 + Atu5098 0.40 -1.3
102,801 + Atu5098 0.45 -0.2
102,801 + Atu5098 0.45 +0.1
102,803 + Atu5098 0.45 -0.3
102,812 + Atu5098 0.46 +0.4
102,820 - Atu5098 0.47 -0.2
102,889 + Atu5098 0.56 -0.5
102,957 + Atu5098 0.65 -0.3
102,975 - Atu5098 0.68 +0.2
102,975 - Atu5098 0.68 -1.0
103,060 + Atu5098 0.79 -1.1
103,060 + Atu5098 0.79 +0.2
103,067 + Atu5098 0.80 +0.4
103,090 - Atu5098 0.83 -0.2
103,147 - -0.1

Or see this region's nucleotide sequence