Strain Fitness in Agrobacterium fabrum C58 around Atu4682

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,838,853	+		Atu4680	0.58	-0.5
1,838,874	-		Atu4680	0.62	+0.0
1,838,916	-		Atu4680	0.68	+0.1
1,838,941	-		Atu4680	0.72	-0.7
1,838,998	-		Atu4680	0.81	-0.2
1,838,998	-		Atu4680	0.81	+1.2
1,839,028	-		Atu4680	0.85	-1.1
1,839,178	+				-1.2
1,839,178	+				-1.9
1,839,178	+				-0.1
1,839,181	-				-0.2
1,839,262	+		Atu4681	0.20	-0.6
1,839,262	+		Atu4681	0.20	+0.8
1,839,363	-		Atu4681	0.34	-0.4
1,839,429	+		Atu4681	0.43	-0.1
1,839,511	-		Atu4681	0.54	+0.0
1,839,517	-		Atu4681	0.55	+0.3
1,839,553	-		Atu4681	0.60	+0.1
1,839,607	+		Atu4681	0.68	-0.1
1,839,615	-		Atu4681	0.69	+0.2
1,839,728	-		Atu4681	0.85	+0.7
1,839,772	+				-0.2
1,840,126	+		Atu4682	0.23	-0.1
1,840,160	+		Atu4682	0.26	+0.1
1,840,161	-		Atu4682	0.26	+0.8
1,840,161	-		Atu4682	0.26	+1.5
1,840,186	+		Atu4682	0.28	+0.1
1,840,256	+		Atu4682	0.34	+0.5
1,840,327	-		Atu4682	0.39	+0.1
1,840,340	+		Atu4682	0.40	+1.0
1,840,352	+		Atu4682	0.41	+0.3
1,840,449	+		Atu4682	0.49	+0.2
1,840,449	-		Atu4682	0.49	+0.5
1,840,453	+		Atu4682	0.49	+0.5
1,840,457	-		Atu4682	0.50	+0.7
1,840,505	-		Atu4682	0.54	+0.5
1,840,509	-		Atu4682	0.54	-0.1
1,840,549	-		Atu4682	0.57	-0.0
1,840,673	-		Atu4682	0.67	-0.8
1,840,686	+		Atu4682	0.68	-0.6
1,840,694	-		Atu4682	0.69	+0.4
1,840,749	-		Atu4682	0.73	+0.2
1,840,876	+		Atu4682	0.83	+0.1
1,840,951	+		Atu4682	0.90	-0.1
1,841,021	-				-0.7
1,841,145	+				-1.1
1,841,192	+				+0.1
1,841,194	+				-1.1
1,841,218	+				+0.3
1,841,226	-				+0.1
1,841,235	+				-0.2
1,841,264	-				+0.6
1,841,264	-				+0.0
1,841,407	+		Atu4683	0.13	+0.1
1,841,425	+		Atu4683	0.14	+0.4
1,841,429	+		Atu4683	0.14	-1.1
1,841,433	-		Atu4683	0.14	+0.2
1,841,500	-		Atu4683	0.18	+0.6
1,841,580	+		Atu4683	0.23	+1.3
1,841,714	+		Atu4683	0.31	-0.4
1,841,714	+		Atu4683	0.31	+0.1
1,841,780	+		Atu4683	0.35	-0.0
1,841,823	+		Atu4683	0.37	-0.2
1,841,833	-		Atu4683	0.38	-0.2
1,841,833	-		Atu4683	0.38	+0.0
1,841,864	+		Atu4683	0.39	+0.0
1,841,874	+		Atu4683	0.40	-0.4
1,841,914	+		Atu4683	0.42	+0.4
1,841,961	-		Atu4683	0.45	-0.2
1,842,005	-		Atu4683	0.48	+0.1
1,842,005	-		Atu4683	0.48	+0.1
1,842,005	-		Atu4683	0.48	-0.1
1,842,020	+		Atu4683	0.49	-0.5
1,842,026	-		Atu4683	0.49	-0.1