Strain Fitness in Agrobacterium fabrum C58 around Atu4616

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,762,254	+				+2.5
1,762,312	-				+1.0
1,762,312	-				+1.1
1,762,312	-				+0.9
1,762,312	-				+1.4
1,762,398	+		Atu4615	0.10	+0.3
1,762,425	-		Atu4615	0.14	+0.6
1,762,441	-		Atu4615	0.15	+0.5
1,762,479	-		Atu4615	0.20	-0.6
1,762,609	+		Atu4615	0.35	-0.0
1,762,626	+		Atu4615	0.37	+0.2
1,762,633	-		Atu4615	0.38	+0.5
1,762,749	-		Atu4615	0.51	+0.8
1,762,779	-		Atu4615	0.54	+0.6
1,762,836	-		Atu4615	0.61	+0.9
1,762,839	+		Atu4615	0.61	+0.2
1,762,858	+		Atu4615	0.64	-0.6
1,762,858	+		Atu4615	0.64	+0.4
1,762,858	+		Atu4615	0.64	-0.5
1,762,858	+		Atu4615	0.64	+0.3
1,762,866	-		Atu4615	0.64	+0.5
1,762,866	-		Atu4615	0.64	+0.6
1,762,910	-		Atu4615	0.70	+0.2
1,762,941	-		Atu4615	0.73	+0.1
1,763,003	+		Atu4615	0.80	+0.5
1,763,011	-		Atu4615	0.81	+0.4
1,763,055	-		Atu4615	0.86	+2.9
1,763,092	-				+0.1
1,763,129	-				+2.1
1,763,154	+				-0.0
1,763,417	+		Atu4616	0.28	-0.5
1,763,817	+		Atu4616	0.72	-0.1
1,763,860	+		Atu4616	0.77	-1.0
1,764,018	-				-0.1
1,764,065	+				+1.5
1,764,093	-				+1.2
1,764,112	-				+1.6
1,764,119	-				+1.4
1,764,170	-				+0.0
1,764,206	+		Atu4617	0.13	+0.4
1,764,220	+		Atu4617	0.14	-0.1
1,764,351	+		Atu4617	0.27	-0.1
1,764,418	+		Atu4617	0.33	-0.0
1,764,526	-		Atu4617	0.43	+0.3
1,764,526	-		Atu4617	0.43	+1.0
1,764,600	-		Atu4617	0.50	+1.1
1,764,707	-		Atu4617	0.61	-0.4
1,764,774	-		Atu4617	0.67	+0.1
1,764,774	-		Atu4617	0.67	-0.7
1,764,803	-		Atu4617	0.70	+0.3
1,764,894	+		Atu4617	0.78	+0.0
1,764,902	-		Atu4617	0.79	+0.5
1,764,921	+		Atu4617	0.81	-0.5
1,764,999	-		Atu4617	0.88	+0.5
1,765,009	-		Atu4617	0.89	+0.0
1,765,042	+				+0.3