Strain Fitness in Agrobacterium fabrum C58 around Atu4606

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,750,192	-		Atu4604	0.67	+0.4
1,750,247	-		Atu4604	0.73	+0.3
1,750,281	-		Atu4604	0.76	-1.0
1,750,303	+		Atu4604	0.79	+0.4
1,750,304	-		Atu4604	0.79	-0.3
1,750,356	-		Atu4604	0.84	+0.3
1,750,412	+				+0.2
1,750,590	+		Atu4605	0.36	+0.1
1,750,622	-		Atu4605	0.48	-0.3
1,750,627	+		Atu4605	0.49	+0.1
1,750,683	+		Atu4605	0.70	-0.3
1,750,691	-		Atu4605	0.73	-0.8
1,750,724	+		Atu4605	0.86	+0.5
1,750,771	-				+0.7
1,750,781	-				-0.1
1,750,825	+				+0.7
1,750,825	+				-0.2
1,750,825	+				+0.4
1,750,833	+				+0.0
1,750,833	-				-0.2
1,750,833	-				-0.2
1,750,833	-				-0.7
1,750,841	+				+0.1
1,750,841	+				-0.1
1,750,876	+				+0.4
1,750,911	+				+0.2
1,750,911	+				+0.0
1,750,911	+				+0.1
1,750,918	+				+0.0
1,750,919	-				+0.2
1,750,919	-				+0.3
1,750,926	-				+0.2
1,750,946	-				+1.1
1,751,002	-				-0.1
1,751,013	+				+0.4
1,751,013	+				+0.8
1,751,057	-				+0.0
1,751,250	+		Atu4606	0.12	+0.7
1,751,266	+		Atu4606	0.13	+1.5
1,751,357	+		Atu4606	0.18	+0.4
1,751,549	+		Atu4606	0.30	+1.1
1,751,561	+		Atu4606	0.31	+0.4
1,751,620	+		Atu4606	0.35	-0.1
1,751,662	-		Atu4606	0.37	+0.7
1,751,705	+		Atu4606	0.40	+0.6
1,751,713	-		Atu4606	0.40	+1.1
1,751,763	+		Atu4606	0.44	+0.8
1,751,824	-		Atu4606	0.47	+0.4
1,751,903	+		Atu4606	0.52	+0.8
1,752,029	-		Atu4606	0.60	+0.5
1,752,123	-		Atu4606	0.66	+0.4
1,752,150	-		Atu4606	0.68	+0.1
1,752,161	+		Atu4606	0.68	+0.2
1,752,270	+		Atu4606	0.75	+0.4
1,752,692	+				+0.5
1,752,692	+				+0.8
1,752,890	-				+0.6
1,752,890	-				-0.3
1,752,944	+				+0.4
1,752,963	+				+0.0
1,752,971	-				+0.6
1,752,973	+				-0.5
1,752,996	-				+1.1
1,753,069	+				+1.1
1,753,118	+		Atu4607	0.12	+1.3
1,753,125	-		Atu4607	0.13	+1.4
1,753,168	-		Atu4607	0.17	+0.5
1,753,209	+		Atu4607	0.20	+0.8
1,753,217	+		Atu4607	0.21	+1.5
1,753,217	-		Atu4607	0.21	+1.5
1,753,286	+		Atu4607	0.27	+1.4
1,753,360	-		Atu4607	0.34	+1.0
1,753,364	-		Atu4607	0.34	+1.4
1,753,408	-		Atu4607	0.38	+1.0
1,753,430	-		Atu4607	0.40	+1.5
1,753,519	-		Atu4607	0.48	+1.6
1,753,530	-		Atu4607	0.49	+1.2
1,753,565	-		Atu4607	0.52	+1.5