Strain Fitness in Agrobacterium fabrum C58 around Atu4572

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,719,422	-				-0.2
1,719,428	-				+0.4
1,719,437	+				+0.2
1,719,625	+		Atu4571	0.21	+0.2
1,719,625	+		Atu4571	0.21	+0.2
1,719,633	-		Atu4571	0.22	+1.9
1,719,668	+		Atu4571	0.26	-0.0
1,719,710	+		Atu4571	0.31	-0.1
1,719,710	+		Atu4571	0.31	+0.3
1,719,717	+		Atu4571	0.32	+1.1
1,719,737	+		Atu4571	0.34	-0.3
1,719,908	-		Atu4571	0.54	+0.5
1,719,975	+		Atu4571	0.62	+0.7
1,719,979	+		Atu4571	0.62	+0.3
1,719,983	-		Atu4571	0.62	-0.6
1,719,987	-		Atu4571	0.63	+0.2
1,720,013	+		Atu4571	0.66	-0.4
1,720,220	-				-1.5
1,720,220	-				-0.0
1,720,282	-				-0.1
1,720,282	-				+0.1
1,720,390	-				-0.1
1,720,434	+				+0.2
1,720,516	+		Atu4572	0.18	-0.1
1,720,524	-		Atu4572	0.19	-0.0
1,720,544	+		Atu4572	0.21	-0.4
1,720,584	+		Atu4572	0.26	+0.1
1,720,612	-		Atu4572	0.29	-0.8
1,720,689	-		Atu4572	0.37	-0.2
1,720,843	-		Atu4572	0.55	+0.7
1,720,859	+		Atu4572	0.56	+0.7
1,720,882	+		Atu4572	0.59	-0.6
1,720,882	+		Atu4572	0.59	-0.1
1,720,909	-		Atu4572	0.62	-0.1
1,720,928	+		Atu4572	0.64	+0.0
1,720,958	-		Atu4572	0.67	-0.8
1,720,970	+		Atu4572	0.69	+1.2
1,720,976	-		Atu4572	0.69	-0.2
1,721,016	-		Atu4572	0.74	-0.3
1,721,123	+		Atu4572	0.86	+1.2
1,721,183	+				+0.2
1,721,203	+				-1.0
1,721,233	-				+0.4
1,721,295	+				+0.2
1,721,295	+				+0.1
1,721,295	+				-0.8
1,721,295	+				+0.1
1,721,295	+				+0.2
1,721,296	-				-0.1
1,721,438	-		Atu4573	0.24	-0.1
1,721,457	-		Atu4573	0.27	+1.0
1,721,492	+		Atu4573	0.31	-0.2
1,721,527	+		Atu4573	0.36	-0.6
1,721,583	+		Atu4573	0.43	+0.2
1,721,633	-		Atu4573	0.49	-1.8
1,721,669	+		Atu4573	0.54	-0.2
1,721,677	-		Atu4573	0.55	-0.2
1,721,686	-		Atu4573	0.56	+1.3
1,721,694	-		Atu4573	0.57	-0.5
1,721,898	+		Atu4573	0.83	-0.5
1,721,898	+		Atu4573	0.83	+0.0
1,721,906	-		Atu4573	0.84	-0.1
1,721,906	-		Atu4573	0.84	+0.3
1,721,906	-		Atu4573	0.84	+2.0
1,721,921	+		Atu4573	0.86	-0.2
1,721,941	-		Atu4573	0.88	-0.1
1,721,958	+				-0.3
1,721,958	+				-0.0
1,721,991	+				+0.0
1,721,999	-				+0.6
1,722,066	+				-0.3
1,722,111	+				+0.5
1,722,147	+				-0.5
1,722,147	+				-0.5
1,722,155	-				-0.5
1,722,244	+		Atu4574	0.20	-0.3